Hg_chrom3_TN10mRNA_5614
Organism: Heterodera glycines Gene Locus: chr3:6929349-6931686 Feature type: polypeptideProtein Sequence
Length: 535
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.978 | 0.956 | 0.918 | 0.387 | 1.869 | 1.294 | 0.49 | 1.308 | 0.955 | 1.617 | 0.963 | 1.869 | 1.817 | 0.611 | 1.259 | 0.935 | 0.552 | 0.51 | 1.15 | 0.55 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5332
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RKHFWEWAERRKRLI
|
4-24
|
0.989
|
7-47
|
0.999
|
— | — |
0.000
|
— | — |
0.184
|
0.922
|
0.043
|
0.188
|
0.050
|
0.034
|
0.062
|
0.004
|
0.034
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007744
|
1.000
|
1.000
|
Hsc_gene_5769.t1
|
Hsc_gene_5769.t1
|
— | — |
KAH7713311.1 Protein K11B4.1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.932|GO:0110165_0.932|GO:0005622_0.896|GO:0016020_0.873|GO:0043226_0.841|GO:0043229_0.823|GO:0005737_0.808|GO:0043227_0.783|GO:0043231_0.743|GO:0005739_0.557
|
IPR019266+26-478+|IPR034913+39-448+
|
— |
PF10037+39-448+Mitochondrial_28S_ribosomal_protein_S27
|
— |
PTHR21393+26-478+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-535
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.717
|
61997.540
|
5.135
|
-13.000
|
31.402
|
12.523
|
50.467
|
49.533
|
15.140
|
16.262
|
39.252
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
lightcyan
|
2518.595
|
2250.391
|
1830.444
|
2182.295
|
2224.322
|
2014.226
|
1919.038
|
1819.562
|
1446.018
|
4594.234
|
3244.999
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.528
|
-0.181
|
0.363
|
— | — | — |
-0.252
|
0.221
|
— | — | — | — | — |
No JSON data available for plots.