Hg_chrom3_TN10mRNA_5615
Organism: Heterodera glycines Gene Locus: chr3:6931958-6932964 Feature type: polypeptideProtein Sequence
Length: 121
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.057 | 1.538 | 0.902 | 0.855 | 0.964 | 2.755 | 0.394 | 1.653 | 1.286 | 1.005 | 0.751 | 3.403 | 0.918 | 0.954 | 1.855 | 0.826 | 0.271 | 0.501 | 0.0 | 0.486 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5333
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.397
|
0.250
|
0.011
|
0.524
|
0.067
|
0.310
|
0.218
|
0.023
|
0.285
|
0.072
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007745
|
1.000
|
1.000
|
Hsc_gene_5770.t1
|
Hsc_gene_5770.t1
|
— |
O45685.2 BLOC-1-related complex subunit 8 homolog [Caenorhabditis elegans]
|
KAI1730687.1 BLOC-1-related complex sub-unit 8 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.923|GO:0005575_0.909|GO:0032501_0.758|GO:0032502_0.747|GO:0048856_0.747|GO:0007275_0.731|GO:0048731_0.714|GO:0032991_0.709|GO:0048513_0.694|GO:0072359_0.675|GO:0007507_0.674|GO:0140535_0.558|GO:0099078_0.540
|
IPR019320+10-116_16-111+
|
— |
PF10167+10-116+BLOC-1-related_complex_sub-unit_8
|
— |
PTHR21146+16-111+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-22;106-121
|
1.000
|
23-105
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.801
|
13980.990
|
9.283
|
6.000
|
28.099
|
8.264
|
52.893
|
47.107
|
17.355
|
10.744
|
42.149
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
670.970
|
577.736
|
524.456
|
472.488
|
444.103
|
422.954
|
659.805
|
702.418
|
846.949
|
873.798
|
862.291
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.370
|
-0.427
|
— | — | — |
0.653
|
0.624
|
— | — | — | — | — | — |
No JSON data available for plots.