Hg_chrom3_TN10mRNA_5617
Organism: Heterodera glycines Gene Locus: chr3:6939369-6941673 Feature type: polypeptideProtein Sequence
Length: 409
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.824 | 1.478 | 0.711 | 0.843 | 0.774 | 1.379 | 0.349 | 1.956 | 0.706 | 2.148 | 0.222 | 0.863 | 2.241 | 1.128 | 1.447 | 1.502 | 0.281 | 0.852 | 0.564 | 0.503 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5335
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cell_membrane
|
— | — |
8-42
|
0.884
|
1-21
|
0.985
|
— | — |
0.000
|
— | — |
0.071
|
0.078
|
0.030
|
0.227
|
0.274
|
0.436
|
0.339
|
0.092
|
0.692
|
0.534
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007747
|
1.000
|
1.000
|
Hsc_gene_5772.t1
|
Hsc_gene_5772.t1
|
— | — |
KAI1711057.1 leucine rich repeat domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.800|GO:0005575_0.789|GO:0110165_0.786|GO:0009987_0.750|GO:0032501_0.645|GO:0016020_0.610|GO:0065007_0.592|GO:0005622_0.585|GO:0050789_0.578|GO:0050794_0.560|GO:0043226_0.542|GO:0005886_0.538|GO:0071944_0.538|GO:0050896_0.532|GO:0043229_0.520|GO:0051716_0.511
|
IPR001611+143-200_227-248_251-272+|IPR003591+141-164_225-248_249-272+|IPR032675+82-372+|IPR052286+35-373+
|
SM00369+141-164_225-248_249-272+
|
PF13855+143-200+Leucine_rich_repeat
|
— |
PTHR24364+35-373+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4
|
1.000
|
5-409
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.797
|
46602.470
|
7.506
|
8.000
|
21.027
|
14.425
|
44.988
|
55.012
|
12.469
|
8.557
|
46.455
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2205.350
|
14781.896
|
2508.958
|
1150.813
|
530.866
|
667.619
|
670.257
|
1548.302
|
335.100
|
1200.065
|
829.366
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.789
|
-3.820
|
-1.016
|
-1.148
|
0.345
|
— |
1.108
|
-1.066
|
— | — | — | — | — |
No JSON data available for plots.