SCN Proteipedia

Hg_chrom3_TN10mRNA_5618

Organism: Heterodera glycines Gene Locus: chr3:6947016-6950567 Feature type: polypeptide

Protein Sequence

Length: 568

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.901	1.065	0.768	0.729	1.115	0.858	0.88	1.673	0.978	1.38	0.747	1.243	1.223	0.948	1.258	1.132	0.722	1.014	1.354	0.777	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5336	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	22-Not_Clustered	0.330

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm\|cell_membrane	—	—	—	—	64-84	0.983	—	—	0.000	—	—	0.281	0.251	0.011	0.486	0.121	0.342	0.255	0.048	0.786	0.068

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003597	2.000	1.000	Hsc_gene_5773.t1	Hsc_gene_5773.t1	—	O45539.2 Tyrosine protein-kinase src-2 [Caenorhabditis elegans]	KAI3415773.1 Tyrosine protein-kinase src-2 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004713\|GO:0005515\|GO:0005524\|GO:0006468	GO:0008150_0.879\|GO:0003674_0.795\|GO:0003824_0.795\|GO:0140096_0.795\|GO:0016740_0.794\|GO:0016772_0.779\|GO:0004672_0.767\|GO:0016301_0.767\|GO:0016773_0.767\|GO:0005575_0.760\|GO:0009987_0.756\|GO:0110165_0.750\|GO:0065007_0.687\|GO:0005622_0.675\|GO:0050789_0.649\|GO:0050794_0.638\|GO:0050896_0.614\|GO:0032501_0.592\|GO:0005737_0.588\|GO:0051716_0.582\|GO:0016020_0.555\|GO:0005886_0.545\|GO:0071944_0.545\|GO:0032502_0.540\|GO:0007154_0.539\|GO:0023052_0.531\|GO:0007165_0.522\|GO:0048856_0.513\|GO:0048518_0.512\|GO:0004713_0.507\|GO:0008152_0.503\|GO:0019538_0.503\|GO:0036211_0.503\|GO:0043170_0.503\|GO:0043412_0.503\|GO:0044238_0.503\|GO:0048522_0.503	IPR000719+301-555+\|IPR000980+183-268_185-262_185-277+\|IPR001245+302-550_340-353_410-428_458-468_477-499_521-543+\|IPR001452+118-179_121-131_121-178_124-171_135-150_152-161_165-177+\|IPR008266+416-428+\|IPR011009+283-553+\|IPR017441+307-330+\|IPR020635+301-550+\|IPR036028+115-189+\|IPR036860+173-291_180-321+\|IPR050198+176-552+	SM00219+301-550+\|SM00252+183-268+\|SM00326+121-178+	PF00017+185-262+SH2_domain\|PF00018+124-171+SH3_domain\|PF07714+302-550+Protein_tyrosine_and_serine/threonine_kinase	G3DSA:1.10.510.10:FF:000318+378-566+Tyrosine-protein_kinase\|G3DSA:3.30.200.20:FF:000053+292-378+Tyrosine-protein_kinase\|G3DSA:3.30.505.10:FF:000044+175-285+Tyrosine-protein_kinase	PTHR24418+176-552+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-568	4xey_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.783	63398.320	7.670	10.500	25.352	12.148	45.599	54.401	14.437	10.915	50.000

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	turquoise	721.078	542.541	802.592	565.548	1279.780	1210.427	827.692	1270.206	313.728	482.374	410.097

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.337	—	-0.397	1.145	—	-0.538	—	-0.474	—	—	—	—	—

No JSON data available for plots.

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