Hg_chrom3_TN10mRNA_5621
Organism: Heterodera glycines Gene Locus: chr3:6961390-6965415 Feature type: polypeptideProtein Sequence
Length: 769
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.877 | 0.937 | 0.828 | 0.628 | 1.929 | 1.767 | 0.557 | 0.78 | 1.011 | 1.336 | 1.143 | 1.224 | 0.686 | 0.425 | 1.539 | 1.282 | 0.917 | 0.768 | 0.2 | 0.344 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5339
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|golgi_apparatus
|
— |
RKLATLEESHERTKKQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.274
|
0.201
|
0.030
|
0.535
|
0.317
|
0.577
|
0.671
|
0.045
|
0.119
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007749
|
1.000
|
1.000
|
Hsc_gene_5777.t1
|
Hsc_gene_5777.t1
|
— | — |
KAI1730647.1 GRIP domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.952|GO:0110165_0.950|GO:0005622_0.909|GO:0005737_0.776|GO:0005829_0.617
|
IPR000237+717-767_720-767_722-764+|IPR051952+91-764+
|
SM00755+720-767+
|
PF01465+722-764+GRIP_domain
|
— |
PTHR23157+91-764+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
130-254;523-629
|
3.000
|
1-129;255-522;630-769
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.538
|
86794.800
|
6.289
|
-2.000
|
32.770
|
5.462
|
58.257
|
41.743
|
16.645
|
16.125
|
44.473
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2596.472
|
2133.436
|
2377.039
|
1865.905
|
1697.105
|
2003.378
|
1591.426
|
2514.314
|
5457.764
|
1947.768
|
3452.052
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.330
|
-0.240
|
-0.168
|
0.254
|
-0.321
|
— |
-0.517
|
— |
-1.388
|
— | — | — |
No JSON data available for plots.