Hg_chrom3_TN10mRNA_5622
Organism: Heterodera glycines Gene Locus: chr3:6965617-6966638 Feature type: polypeptideProtein Sequence
Length: 160
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.799 | 1.308 | 0.795 | 0.0 | 1.562 | 1.122 | 0.595 | 1.25 | 1.111 | 1.267 | 1.042 | 0.735 | 1.563 | 1.202 | 2.041 | 0.625 | 0.615 | 0.852 | 0.481 | 0.919 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5340
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.962
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.313
|
0.186
|
0.011
|
0.526
|
0.199
|
0.809
|
0.389
|
0.003
|
0.471
|
0.148
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007750
|
1.000
|
1.000
|
Hsc_gene_5778.t1
|
Hsc_gene_5778.t1
|
— |
Q9UMY4.4 Sorting nexin-12 [Homo sapiens]
|
KAI1713500.1 PX domain-containing protein [Ditylenchus destructor];KAI1724715.1 PX domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0035091
|
GO:0005575_0.899|GO:0110165_0.889|GO:0005622_0.853|GO:0008150_0.817|GO:0016020_0.817|GO:0043226_0.801|GO:0043229_0.782|GO:0043227_0.761|GO:0005737_0.758|GO:0009987_0.742|GO:0043231_0.729|GO:0003674_0.571|GO:0071944_0.569|GO:0005886_0.568|GO:0051179_0.505
|
IPR001683+24-146_25-149_56-144+|IPR036871+19-159_22-147+|IPR051074+3-159+
|
SM00312+24-146+
|
PF00787+56-144+PX_domain
|
G3DSA:3.30.1520.10:FF:000002+20-159+Sorting_nexin_12
|
PTHR45963+3-159+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-11
|
1.000
|
12-160
|
5f0p_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.824
|
18651.250
|
10.039
|
7.000
|
33.125
|
11.875
|
51.250
|
48.750
|
19.375
|
13.750
|
41.875
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
1530.581
|
1147.879
|
1502.307
|
1202.479
|
1538.326
|
1760.957
|
2088.200
|
2434.183
|
627.025
|
1848.149
|
1324.810
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.158
|
— |
-0.212
|
0.324
|
0.210
|
0.257
|
0.362
|
— | — | — | — | — | — |
No JSON data available for plots.