Hg_chrom3_TN10mRNA_5623
Organism: Heterodera glycines Gene Locus: chr3:6966665-6975640 Feature type: polypeptideProtein Sequence
Length: 1,902
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.636 | 1.333 | 1.042 | 0.653 | 1.332 | 1.105 | 0.482 | 1.157 | 1.379 | 1.478 | 0.996 | 1.361 | 1.446 | 0.88 | 1.105 | 1.006 | 0.819 | 0.844 | 0.688 | 0.82 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5341
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KRPR,KRRR,RKTRNGQGPSTRRRTV,RRVSPSNIENTAKRLER,KRALQHLRKLDAEKIKKE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.632
|
0.249
|
0.008
|
0.518
|
0.045
|
0.060
|
0.075
|
0.019
|
0.126
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007751
|
1.000
|
1.000
|
Hsc_gene_5779.t1
|
Hsc_gene_5779.t1
|
— |
P34529.3 Endoribonuclease dcr-1 [Caenorhabditis elegans]
|
KAI3415780.1 Protein Dicer [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723|GO:0004525|GO:0005515|GO:0005524|GO:0006396|GO:0016891|GO:0030422|GO:0031054
|
GO:0008150_0.940|GO:0009987_0.893|GO:0065007_0.806|GO:0005575_0.804|GO:0110165_0.804|GO:0003674_0.790|GO:0050789_0.783|GO:0008152_0.768|GO:0050794_0.752|GO:0005622_0.744|GO:0044237_0.742|GO:0009058_0.735|GO:0044238_0.730|GO:0043170_0.729|GO:0044249_0.719|GO:0009059_0.704|GO:0010467_0.688|GO:0019222_0.686|GO:0048519_0.678|GO:0043226_0.676|GO:0060255_0.676|GO:0031323_0.675|GO:0006139_0.662|GO:0009889_0.661|GO:0031326_0.661|GO:0010556_0.659|GO:0010468_0.658|GO:0048523_0.653|GO:0034654_0.649|GO:0090304_0.649|GO:0016070_0.641|GO:0141187_0.640|GO:0032774_0.637|GO:0005737_0.634|GO:0009892_0.632|GO:0010605_0.631|GO:0032501_0.629|GO:0016020_0.628|GO:0031324_0.624|GO:0009890_0.620|GO:0010558_0.620|GO:0031327_0.620|GO:0010629_0.618|GO:0050896_0.612|GO:0006396_0.600|GO:0031047_0.598|GO:0070918_0.586|GO:0071840_0.583|GO:0043229_0.578|GO:0016043_0.570|GO:0005488_0.569|GO:0043227_0.533
|
IPR000999+1371-1587_1388-1607_1389-1605_1406-1585_1630-1793_1645-1816_1646-1813_1666-1674_1666-1793+|IPR001650+350-540_384-487_425-485+|IPR003100+836-996_838-972_866-992+|IPR005034+559-661_559-665+|IPR011545+57-172+|IPR014001+11-195_22-176+|IPR014720+1818-1884+|IPR027417+9-243_62-495_335-509+|IPR036085+842-929+|IPR036389+1383-1601_1386-1604_1627-1822_1628-1816+|IPR038248+554-666+|IPR044441+1799-1887+|IPR048512+710-827+
|
SM00487+11-195+|SM00490+384-487+|SM00535+1388-1607_1645-1816+|SM00949+836-996+
|
PF00270+57-172+DEAD/DEAH_box_helicase|PF00271+425-485+Helicase_conserved_C-terminal_domain|PF00636+1406-1585_1666-1793+Ribonuclease_III_domain|PF02170+866-992+PAZ_domain|PF03368+559-661+Dicer_dimerisation_domain|PF20931+710-827+Dicer,_platform_domain|PF20932+1799-1887+Dicer,_dsRNA-binding_domain
|
G3DSA:1.10.1520.10:FF:000005+1618-1817+Putative_endoribonuclease_dicer|G3DSA:1.10.1520.10:FF:000023+1383-1527+Endoribonuclease_dcr-1
|
PTHR14950+29-1889+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1066-1166;1901-1902
|
2.000
|
1-1065;1167-1900
|
7yyn_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.545
|
218051.280
|
6.118
|
-11.000
|
28.023
|
11.199
|
50.105
|
49.895
|
14.301
|
13.722
|
45.058
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
3704.823
|
8646.384
|
4090.557
|
3669.209
|
3676.027
|
3420.733
|
3402.008
|
3791.182
|
3344.796
|
2188.967
|
2684.322
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.310
|
-1.374
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.