SCN Proteipedia

Hg_chrom3_TN10mRNA_5625

Organism: Heterodera glycines Gene Locus: chr3:6977461-6979180 Feature type: polypeptide

Protein Sequence

Length: 166

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.56	0.981	1.862	0.0	1.205	0.772	1.004	0.301	1.606	0.814	2.464	0.709	0.502	0.695	0.984	1.807	0.296	0.639	0.463	0.354	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5343	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	0.968

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KGKGSKKSSNKE,KKAKIRSKEKAKAGVKKTR	—	—	—	—	—	—	0.000	—	—	0.953	0.125	0.023	0.178	0.009	0.074	0.056	0.006	0.031	0.204

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007752	1.000	1.000	Hsc_gene_5780.t1	Hsc_gene_5780.t1	—	O65154.1 RNA polymerase II transcriptional coactivator KIWI [Arabidopsis thaliana]	KAF4308637.1 putative RNA polymerase II transcriptional protein [Botryosphaeria dothidea]	No	-0.020

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0003713\|GO:0006355\|GO:0060261	GO:0008150_0.903\|GO:0009987_0.855\|GO:0005575_0.824\|GO:0110165_0.821\|GO:0003674_0.809\|GO:0005622_0.804\|GO:0043226_0.792\|GO:0065007_0.791\|GO:0005488_0.787\|GO:0043229_0.786\|GO:0050789_0.781\|GO:0008152_0.775\|GO:0009058_0.775\|GO:0043170_0.775\|GO:0044237_0.775\|GO:0009059_0.774\|GO:0010467_0.774\|GO:0044249_0.774\|GO:0050794_0.769\|GO:0044238_0.765\|GO:0016020_0.764\|GO:0006139_0.756\|GO:0043227_0.748\|GO:0090304_0.745\|GO:0034654_0.740\|GO:0043231_0.739\|GO:0019222_0.735\|GO:0016070_0.732\|GO:0141187_0.731\|GO:0031323_0.730\|GO:0032774_0.726\|GO:0060255_0.724\|GO:0080090_0.721\|GO:0009889_0.716\|GO:0031326_0.714\|GO:0010468_0.712\|GO:0010556_0.712\|GO:0019219_0.700\|GO:0006351_0.697\|GO:0051252_0.695\|GO:0006355_0.694\|GO:2001141_0.694\|GO:0005634_0.628\|GO:0097159_0.588\|GO:0003676_0.580\|GO:0048518_0.575\|GO:0048522_0.573\|GO:0009893_0.562\|GO:0031325_0.557\|GO:0010604_0.555\|GO:0009891_0.553\|GO:0031328_0.553\|GO:0010557_0.552\|GO:0045935_0.546\|GO:0006366_0.543\|GO:0051254_0.542\|GO:0045893_0.539\|GO:1902680_0.539\|GO:0003677_0.526	IPR003173+105-155+\|IPR009044+94-166_104-164+\|IPR045125+20-164+	—	PF02229+105-155+Transcriptional_Coactivator_p15_(PC4)	—	PTHR13215+20-164+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-109	1.000	110-166	4usg_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.944	18292.560	10.045	6.500	39.157	4.217	60.843	39.157	21.687	17.470	50.000

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	lightcyan	1594.893	1620.647	1114.434	1354.250	1752.768	1311.524	1105.024	1053.894	1031.725	2711.662	1991.689

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.770	-0.396	0.390	0.340	-0.404	-0.236	-0.417	—	—	—	—	—	—

No JSON data available for plots.

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