Hg_chrom3_TN10mRNA_5627
Organism: Heterodera glycines Gene Locus: chr3:6984243-6986885 Feature type: polypeptideProtein Sequence
Length: 491
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.545 | 1.042 | 0.704 | 1.124 | 1.086 | 0.888 | 0.509 | 1.12 | 1.494 | 1.651 | 1.018 | 1.438 | 1.81 | 0.548 | 1.33 | 0.989 | 0.801 | 0.957 | 1.253 | 1.018 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5345
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.839
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
3-43
|
0.985
|
— | — | — | — |
0.000
|
— | — |
0.181
|
0.112
|
0.025
|
0.278
|
0.838
|
0.272
|
0.515
|
0.146
|
0.168
|
0.104
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007754
|
1.000
|
1.000
|
Hsc_gene_5782.t1
|
Hsc_gene_5782.t1;Hsc_gene_5783.t1
|
— |
Q9D081.1 UDP-N-acetylglucosamine transferase subunit ALG14 homolog [Mus musculus]
|
KAI3415784.1 UDP-N-acetylglucosamine transferase subunit [Globodera pallida]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006488
|
GO:0005575_0.921|GO:0110165_0.915|GO:0016020_0.872|GO:0005886_0.824|GO:0071944_0.824|GO:0005622_0.811|GO:0043226_0.793|GO:0005737_0.775|GO:0043229_0.772|GO:0043227_0.764|GO:0043231_0.744|GO:0005773_0.711|GO:0012505_0.695|GO:0005783_0.606|GO:0008150_0.578|GO:0009987_0.522
|
IPR013969+297-490_321-490+
|
— |
PF08660+321-490+Oligosaccharide_biosynthesis_protein_Alg14_like
|
— |
PTHR12154+297-490+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-491
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.751
|
57135.730
|
8.919
|
19.500
|
25.866
|
13.849
|
45.621
|
54.379
|
15.479
|
10.387
|
41.548
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
lightcyan
|
785.382
|
819.495
|
557.402
|
808.795
|
842.821
|
724.163
|
913.035
|
762.673
|
478.632
|
1041.429
|
800.230
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.787
|
-0.156
|
0.647
|
— |
-0.204
|
0.344
|
— |
0.403
|
— | — | — | — | — |
No JSON data available for plots.