Hg_chrom3_TN10mRNA_5628
Organism: Heterodera glycines Gene Locus: chr3:6987088-6987891 Feature type: polypeptideProtein Sequence
Length: 126
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.369 | 1.292 | 0.866 | 0.274 | 0.926 | 0.814 | 0.094 | 2.381 | 1.764 | 0.858 | 1.684 | 2.334 | 1.543 | 0.916 | 1.458 | 0.907 | 0.52 | 1.203 | 1.832 | 1.401 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5346
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.828
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.071
|
0.950
|
0.009
|
0.090
|
0.030
|
0.019
|
0.033
|
0.018
|
0.041
|
0.012
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007755
|
1.000
|
1.000
|
Hsc_gene_5784.t1
|
Hsc_gene_5784.t1
|
— | — |
NP_001379245.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Caenorhabditis elegans];CAB16513.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Caenorhabditis elegans]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.901|GO:0110165_0.900|GO:0005622_0.882|GO:0043226_0.851|GO:0043229_0.838|GO:0005737_0.820|GO:0016020_0.810|GO:0043227_0.793|GO:0043231_0.793|GO:0005739_0.588
|
IPR016488+10-125+
|
— | — | — |
PTHR12964+10-125+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-126
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.616
|
15326.920
|
10.396
|
13.000
|
33.333
|
17.460
|
51.587
|
48.413
|
23.016
|
10.317
|
37.302
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1233.769
|
790.130
|
1160.359
|
1068.183
|
1383.842
|
1310.914
|
926.882
|
1473.383
|
1228.822
|
1433.489
|
1345.775
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.325
|
0.298
|
— |
0.342
|
— |
-0.491
|
— |
-0.526
|
— | — | — | — | — |
No JSON data available for plots.