Hg_chrom3_TN10mRNA_5630
Organism: Heterodera glycines Gene Locus: chr3:6989570-6990789 Feature type: polypeptideProtein Sequence
Length: 216
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.077 | 0.969 | 1.094 | 0.479 | 0.849 | 1.187 | 0.496 | 1.389 | 1.543 | 1.314 | 0.772 | 1.906 | 1.8 | 0.445 | 1.417 | 0.926 | 0.911 | 0.912 | 0.0 | 1.089 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5348
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— |
KRKH
|
— | — | — | — | — | — |
0.085
|
— | — |
0.118
|
0.161
|
0.011
|
0.166
|
0.734
|
0.496
|
0.693
|
0.019
|
0.217
|
0.007
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007756
|
1.000
|
1.000
|
Hsc_gene_5785.t1
|
Hsc_gene_5785.t1
|
— |
Q5ZJW4.1 Vesicle-trafficking protein SEC22b [Gallus gallus]
|
KAH7705641.1 vesicle trafficking protein SEC22b [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005484|GO:0006888|GO:0006890
|
GO:0005575_0.921|GO:0110165_0.921|GO:0016020_0.842|GO:0005622_0.780|GO:0005737_0.751|GO:0005886_0.750|GO:0071944_0.750|GO:0043226_0.698|GO:0008150_0.682|GO:0043229_0.679|GO:0043227_0.667|GO:0043231_0.658|GO:0005773_0.616|GO:0009987_0.579|GO:0012505_0.554
|
IPR010908+4-127_7-121_37-120_38-119+|IPR011012+3-126+|IPR042855+134-213_135-195+|IPR044565+3-211+
|
SM01270+37-120+
|
PF00957+134-213+Synaptobrevin|PF13774+38-119+Regulated-SNARE-like_domain
|
— |
PTHR45837+3-211+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-216
|
8hr0_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.578
|
24627.340
|
8.264
|
5.000
|
25.926
|
12.963
|
46.759
|
53.241
|
14.815
|
11.111
|
45.370
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellow
|
900.990
|
722.723
|
525.369
|
770.741
|
1052.395
|
946.050
|
1233.140
|
723.047
|
507.141
|
1321.426
|
972.447
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.690
|
— |
0.662
|
0.417
|
— |
0.393
|
-0.491
|
0.912
|
— | — | — | — | — |
No JSON data available for plots.