SCN Proteipedia

Hg_chrom3_TN10mRNA_5631

Organism: Heterodera glycines Gene Locus: chr3:6990905-6997299 Feature type: polypeptide

Protein Sequence

Length: 1,364

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.074	1.142	0.88	0.758	1.21	0.752	0.768	1.686	1.189	1.248	0.6	0.863	1.69	0.86	1.377	0.911	0.721	0.966	1.466	0.712	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5349	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.283	0.351	0.111	0.635	0.278	0.350	0.300	0.035	0.299	0.202

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003605	1.000	2.000	Hsc_gene_5786.t1;Hsc_gene_5786.t2	Hsc_gene_5786.t1;Hsc_gene_5786.t2;Hsc_gene_5787.t1	—	P35574.1 Glycogen debranching enzyme [Oryctolagus cuniculus]	KAI1727512.1 glycogen debranching enzyme, glucanotransferase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004134\|GO:0004135\|GO:0005975\|GO:0005978\|GO:0005980	GO:0008150_0.957\|GO:0003674_0.901\|GO:0009987_0.900\|GO:0005575_0.885\|GO:0110165_0.885\|GO:0016020_0.799\|GO:0008152_0.798\|GO:0003824_0.794\|GO:0005622_0.786\|GO:0044238_0.776\|GO:0071944_0.767\|GO:0044237_0.764\|GO:0005737_0.742\|GO:0043170_0.736\|GO:0005886_0.735\|GO:0043226_0.717\|GO:0043229_0.702\|GO:0016740_0.700\|GO:0016787_0.698\|GO:0043227_0.685\|GO:0005975_0.680\|GO:0005976_0.677\|GO:0043231_0.671\|GO:0005977_0.670\|GO:0006091_0.670\|GO:0006112_0.670\|GO:0015980_0.670\|GO:0044042_0.670\|GO:0016757_0.659\|GO:0016758_0.659\|GO:0016798_0.657\|GO:0004553_0.656\|GO:0004133_0.650\|GO:0004134_0.650\|GO:0004135_0.650\|GO:0015926_0.650\|GO:0090599_0.650\|GO:0005773_0.608\|GO:0032991_0.605\|GO:0012505_0.592\|GO:0005829_0.588\|GO:0005576_0.582\|GO:0031982_0.574\|GO:0031974_0.564\|GO:0043233_0.563\|GO:0070013_0.562\|GO:1902494_0.558\|GO:0097708_0.557\|GO:0031410_0.554\|GO:0099503_0.549\|GO:0030141_0.547\|GO:0031983_0.540\|GO:0034774_0.540\|GO:0043033_0.540\|GO:0060205_0.540\|GO:0101002_0.540\|GO:1904813_0.540	IPR006421+20-1355+\|IPR008928+1024-1358+\|IPR010401+3-1356+\|IPR012341+1039-1336+\|IPR017853+117-653+\|IPR032788+674-930+\|IPR032790+1022-1356+\|IPR032792+95-568_111-536+	—	PF06202+1022-1356+Amylo-alpha-1,6-glucosidase\|PF14701+111-536+Glycogen_debranching_enzyme,_glucanotransferase_domain\|PF14702+674-930+Central_domain_of_human_glycogen_debranching_enzyme	G3DSA:3.20.20.80:FF:000070+118-244+GDB1p_Glycogen_debranching_enzyme\|G3DSA:3.20.20.80:FF:000108+434-631+glycogen_debranching_enzyme	PTHR10569+3-1356+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-1364	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.602	153611.630	6.646	4.000	26.173	13.783	44.795	55.205	14.076	12.097	49.267

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	orange	2235.809	2894.109	2684.719	2544.668	2711.923	2659.925	2258.699	1905.802	1372.160	2130.102	1805.270

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.338	-0.323	—	—	—	-0.226	-0.588	0.388	—	—	—	—	—

No JSON data available for plots.

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