Hg_chrom3_TN10mRNA_5632
Organism: Heterodera glycines Gene Locus: chr3:6997583-6999034 Feature type: polypeptideProtein Sequence
Length: 346
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.706 | 0.807 | 1.471 | 3.687 | 0.915 | 1.037 | 1.135 | 0.578 | 0.45 | 0.703 | 0.788 | 1.19 | 1.204 | 1.278 | 1.593 | 0.867 | 1.09 | 0.525 | 0.222 | 0.51 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5350
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KKKLCRQRLYRKLMR
|
— | — | — | — |
1-22
|
0.996
|
0.994
|
0.000
|
0.000
|
0.221
|
0.241
|
0.028
|
0.163
|
0.171
|
0.102
|
0.108
|
0.012
|
0.159
|
0.928
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003606
|
2.000
|
1.000
|
Hsc_gene_5788.t2
|
Hsc_gene_5788.t1;Hsc_gene_5788.t2
|
— | — |
KAI1730035.1 shK domain-like domain-containing protein [Ditylenchus destructor]
|
No
|
-0.640
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR003582+226-271_235-270_239-270_303-344_304-343+
|
SM00254+226-271_303-344+
|
PF01549+239-270_304-343+ShK_domain-like
|
G3DSA:1.10.10.1940:FF:000002+297-344+PHAryngeal_gland_Toxin-related
|
PTHR46219+184-344+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-346
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.768
|
37818.620
|
6.413
|
0.000
|
27.746
|
7.514
|
47.977
|
52.023
|
14.162
|
13.584
|
60.694
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
63.108
|
32.322
|
32.352
|
10.079
|
9.554
|
9.821
|
25.180
|
14.873
|
22.114
|
209.193
|
129.016
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.818
|
-1.573
|
— | — |
1.376
|
— |
0.911
|
— | — | — | — | — |