Hg_chrom3_TN10mRNA_5634
Organism: Heterodera glycines Gene Locus: chr3:7003168-7006486 Feature type: polypeptideProtein Sequence
Length: 506
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.287 | 1.057 | 0.467 | 0.477 | 0.758 | 0.811 | 0.941 | 1.877 | 1.01 | 1.896 | 0.359 | 1.976 | 2.031 | 0.608 | 0.726 | 1.016 | 0.81 | 0.958 | 0.76 | 0.988 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5352
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
15-36
|
0.930
|
— | — | — | — |
0.000
|
— | — |
0.068
|
0.058
|
0.014
|
0.121
|
0.470
|
0.503
|
0.448
|
0.011
|
0.563
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007757
|
1.000
|
1.000
|
Hsc_gene_5790.t1
|
Hsc_gene_5790.t1
|
— |
Q3BCQ7.1 Ammonium transporter Rh type C [Pan troglodytes]
|
KAF7632363.1 Ammonium_transp domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005886|GO:0008519|GO:0016020|GO:0072488
|
GO:0008150_0.840|GO:0005575_0.786|GO:0009987_0.786|GO:0110165_0.779|GO:0016020_0.736|GO:0051179_0.717|GO:0006810_0.707|GO:0051234_0.707|GO:0071944_0.697|GO:0005886_0.686|GO:0055085_0.656|GO:0003674_0.654|GO:0071705_0.605|GO:0098660_0.593|GO:0098662_0.583|GO:0072488_0.559
|
IPR002229+17-35_54-71_83-100_123-139_146-169_180-195_214-232_281-294_304-322_343-359+|IPR024041+26-445+|IPR029020+4-447+
|
— |
PF00909+26-445+Ammonium_Transporter_Family
|
— |
PTHR11730+14-439+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-506
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.636
|
55504.310
|
6.809
|
3.500
|
16.798
|
15.415
|
36.561
|
63.439
|
9.684
|
7.115
|
49.012
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
purple
|
972.030
|
178.969
|
1394.344
|
931.043
|
981.718
|
1263.447
|
1616.771
|
2331.230
|
233.769
|
815.733
|
566.320
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.733
|
2.242
|
-0.474
|
— |
0.379
|
0.367
|
0.782
|
-0.386
|
— | — | — | — | — |
No JSON data available for plots.