Hg_chrom3_TN10mRNA_5636
Organism: Heterodera glycines Gene Locus: chr3:7014049-7016824 Feature type: polypeptideProtein Sequence
Length: 742
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.41 | 1.41 | 0.711 | 0.511 | 0.876 | 1.313 | 0.963 | 1.617 | 0.659 | 1.093 | 0.674 | 1.665 | 0.524 | 0.985 | 0.99 | 1.598 | 1.348 | 0.551 | 0.207 | 0.357 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5354
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.779
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RGHKRAR
|
— | — |
101-129
|
0.997
|
— | — |
0.000
|
— | — |
0.922
|
0.198
|
0.019
|
0.252
|
0.019
|
0.039
|
0.022
|
0.018
|
0.056
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007759
|
1.000
|
1.000
|
Hsc_gene_5792.t2
|
Hsc_gene_5792.t1;Hsc_gene_5792.t2
|
— | — |
KAI6174289.1 D-3-phosphoglycerate dehydrogenase [Aphelenchoides besseyi];KAI6211004.1 D-3-phosphoglycerate dehydrogenase [Aphelenchoides besseyi]
|
No
|
0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
58-106;215-742
|
2.000
|
1-57;107-214
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.905
|
78190.860
|
7.738
|
13.000
|
21.698
|
6.604
|
52.291
|
47.709
|
12.534
|
9.164
|
59.838
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
brown
|
664.287
|
1456.278
|
290.142
|
784.408
|
1624.062
|
1302.516
|
1271.061
|
801.856
|
27.556
|
61.717
|
47.076
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.557
|
-1.030
|
1.543
|
1.016
|
— | — |
-0.798
|
0.802
|
— |
5.021
|
5.347
|
— | — |
No JSON data available for plots.