Hg_chrom3_TN10mRNA_5637
Organism: Heterodera glycines Gene Locus: chr3:7021498-7022584 Feature type: polypeptideProtein Sequence
Length: 174
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.668 | 1.337 | 0.731 | 1.387 | 0.862 | 0.737 | 0.958 | 1.724 | 0.383 | 1.709 | 0.261 | 1.69 | 1.437 | 1.437 | 0.821 | 1.314 | 1.79 | 0.348 | 0.884 | 0.507 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5355
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.374
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.144
|
0.020
|
0.006
|
0.243
|
0.167
|
0.589
|
0.268
|
0.312
|
0.891
|
0.247
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007760
|
1.000
|
1.000
|
Hsc_gene_5794.t1
|
Hsc_gene_5794.t1;Hsc_gene_5794.t2
|
— | — |
KAI3415841.1 hypothetical protein GPALN_005413 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005154|GO:0007173|GO:0048018
|
GO:0005575_0.930|GO:0110165_0.930|GO:0071944_0.882|GO:0016020_0.876|GO:0005886_0.875|GO:0005622_0.755|GO:0005737_0.755|GO:0005773_0.755|GO:0043226_0.755|GO:0043227_0.755|GO:0043229_0.755|GO:0043231_0.755|GO:0012505_0.737|GO:0005794_0.589
|
IPR000742+48-92_80-91+|IPR043403+41-93+
|
— | — | — |
PTHR12332+41-93+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-174
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.746
|
18944.320
|
5.486
|
-3.000
|
18.391
|
11.494
|
47.126
|
52.874
|
9.195
|
9.195
|
57.471
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
251.718
|
119.418
|
99.260
|
60.894
|
205.470
|
198.763
|
306.546
|
202.292
|
7.584
|
648.337
|
373.729
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.502
|
-1.109
|
-0.592
|
1.722
|
— |
0.636
|
— |
0.746
|
-6.578
|
— | — | — | — |
No JSON data available for plots.