Hg_chrom3_TN10mRNA_5640
Organism: Heterodera glycines Gene Locus: chr3:7038609-7041902 Feature type: polypeptideProtein Sequence
Length: 701
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.581 | 1.227 | 0.908 | 0.541 | 1.593 | 1.134 | 0.323 | 1.783 | 1.205 | 1.812 | 1.21 | 1.259 | 1.664 | 0.384 | 1.165 | 1.264 | 0.631 | 0.713 | 0.768 | 0.545 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5358
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
RRQKRKS,KKRRQKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.609
|
0.224
|
0.005
|
0.611
|
0.092
|
0.148
|
0.402
|
0.051
|
0.052
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007763
|
1.000
|
1.000
|
Hsc_gene_5801.t1
|
Hsc_gene_5801.t1
|
— | — |
KHN71977.1 BAI1-associated protein 3 [Toxocara canis]
|
No
|
-0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.954|GO:0032501_0.556|GO:0005575_0.555|GO:0110165_0.548|GO:0032502_0.547|GO:0048856_0.547|GO:0005622_0.532|GO:0007275_0.521
|
IPR002716+509-569+|IPR011990+22-216_24-292+|IPR045153+16-331+
|
— |
PF13638+509-569+PIN_domain|PF22695+50-246+EST1-like_DNA-binding_domain
|
— |
PTHR15696+16-331+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3
|
1.000
|
4-701
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.509
|
81721.620
|
6.961
|
6.500
|
31.812
|
12.411
|
54.208
|
45.792
|
17.261
|
14.551
|
38.944
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1035.995
|
1831.008
|
990.893
|
870.058
|
903.812
|
809.354
|
733.907
|
1095.132
|
1131.766
|
970.841
|
1039.809
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.115
|
-1.211
|
— | — | — | — |
0.333
|
-0.439
|
— | — | — | — | — |
No JSON data available for plots.