Hg_chrom3_TN10mRNA_5641
Organism: Heterodera glycines Gene Locus: chr3:7042009-7046059 Feature type: polypeptideProtein Sequence
Length: 910
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.009 | 1.329 | 1.778 | 0.455 | 1.3 | 1.014 | 0.772 | 1.154 | 0.952 | 1.158 | 0.816 | 1.293 | 1.19 | 0.782 | 1.099 | 1.052 | 0.847 | 0.749 | 0.676 | 0.42 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5359
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRR,KVKK,RKDNQFSIEDAIYRKISK,KRLIHEAGSAKAKRRLQK,KRAIADIQRTSLAKRRLE,KRDKNKLSKPLDSSRKAKL,RPKKGKTKRLIHEAGSAKAKRRL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.920
|
0.042
|
0.004
|
0.295
|
0.055
|
0.028
|
0.025
|
0.002
|
0.026
|
0.004
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007764
|
1.000
|
1.000
|
Hsc_gene_5802.t1
|
Hsc_gene_5802.t1;Hsc_gene_5803.t1
|
— | — |
KAI1725873.1 condensin complex subunit 2 domain-containing protein [Ditylenchus destructor]
|
No
|
0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000796|GO:0007076
|
— |
IPR022816+209-894+
|
— | — | — |
PTHR13108+209-894+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;86-150;324-520;675-741;790-842
|
5.000
|
3-85;151-323;521-674;742-789;843-910
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.723
|
100861.690
|
4.456
|
-51.500
|
30.659
|
8.901
|
52.857
|
47.143
|
13.077
|
17.582
|
53.516
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkgrey
|
1752.604
|
1469.356
|
1019.711
|
961.433
|
1197.529
|
1079.594
|
1473.255
|
1042.524
|
1113.454
|
3741.275
|
2615.066
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.757
|
-0.749
|
— |
0.285
|
-0.135
|
0.459
|
— |
0.642
|
— | — | — | — | — |
No JSON data available for plots.