Hg_chrom3_TN10mRNA_5645
Organism: Heterodera glycines Gene Locus: chr3:7054080-7055613 Feature type: polypeptideProtein Sequence
Length: 208
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.503 | 1.118 | 1.486 | 0.166 | 0.801 | 1.603 | 0.744 | 2.163 | 1.389 | 1.299 | 0.51 | 1.414 | 1.202 | 0.832 | 1.079 | 1.374 | 0.867 | 0.874 | 1.479 | 0.707 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5363
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.977
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.650
|
0.151
|
0.067
|
0.648
|
0.269
|
0.311
|
0.225
|
0.051
|
0.095
|
0.097
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007767
|
1.000
|
1.000
|
Hsc_gene_5807.t1
|
Hsc_gene_5807.t1
|
— |
Q9UM13.1 Anaphase-promoting complex subunit 10 [Homo sapiens]
|
KAI1730095.1 anaphase-promoting complex, subunit 10 (APC10) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005680|GO:0031145
|
GO:0008150_0.824|GO:0005575_0.802|GO:0110165_0.758|GO:0005622_0.726|GO:0005737_0.599|GO:0009987_0.571|GO:0016020_0.571|GO:0043226_0.565|GO:0043229_0.545|GO:0008152_0.540|GO:0043227_0.523|GO:0044238_0.522|GO:0043231_0.517|GO:0043170_0.508
|
IPR004939+10-195_24-179_31-195+|IPR008979+13-171+|IPR016901+28-176_33-170+
|
SM01337+31-195+
|
PF03256+24-179+Anaphase-promoting_complex,_subunit_10_(APC10)
|
— |
PTHR12936+28-176+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-208
|
1jhj_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.498
|
23599.390
|
5.495
|
-4.500
|
25.962
|
12.981
|
51.923
|
48.077
|
12.981
|
12.981
|
49.038
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
lightcyan
|
728.821
|
518.651
|
673.336
|
544.673
|
580.296
|
531.149
|
826.851
|
797.575
|
913.764
|
826.071
|
863.653
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.147
|
— |
-0.198
|
— | — |
0.649
|
0.480
|
— | — | — | — | — | — |
No JSON data available for plots.