Hg_chrom3_TN10mRNA_5646
Organism: Heterodera glycines Gene Locus: chr3:7055621-7057700 Feature type: polypeptideProtein Sequence
Length: 452
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.9 | 1.441 | 0.644 | 0.458 | 1.069 | 0.511 | 0.764 | 0.996 | 1.18 | 1.495 | 1.307 | 1.562 | 1.598 | 0.298 | 1.219 | 0.727 | 0.979 | 1.106 | 1.191 | 1.041 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5364
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— |
KKIDGVILNAATKSKKY
|
43-69
|
0.905
|
— | — | — | — |
0.000
|
— | — |
0.216
|
0.536
|
0.218
|
0.205
|
0.776
|
0.215
|
0.319
|
0.014
|
0.198
|
0.222
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007768
|
1.000
|
1.000
|
Hsc_gene_5808.t1
|
Hsc_gene_5808.t1
|
— |
Q8CEE7.1 Retinol dehydrogenase 13 [Mus musculus]
|
KAI3415829.1 Riboflavin biosynthesis protein RibBA [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.865|GO:0110165_0.865|GO:0008150_0.780|GO:0016020_0.738|GO:0009987_0.631|GO:0003674_0.613|GO:0005622_0.598|GO:0043226_0.575|GO:0043229_0.545|GO:0005737_0.534|GO:0043227_0.531|GO:0071944_0.518|GO:0005886_0.511
|
IPR002347+104-248_105-122_184-195_287-306_309-326+|IPR036291+102-350+
|
— |
PF00106+104-248+short_chain_dehydrogenase
|
— |
PTHR24320+98-407+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-452
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.683
|
51535.920
|
10.080
|
25.500
|
26.549
|
12.832
|
45.796
|
54.204
|
16.593
|
9.956
|
45.133
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1967.876
|
1400.145
|
1516.316
|
1754.098
|
1913.732
|
1777.986
|
1635.045
|
1489.219
|
2316.058
|
2564.960
|
2458.288
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.114
|
0.188
|
0.319
|
0.093
|
— | — |
-0.361
|
0.278
|
— | — | — | — | — |
No JSON data available for plots.