Hg_chrom3_TN10mRNA_5647
Organism: Heterodera glycines Gene Locus: chr3:7057705-7058796 Feature type: polypeptideProtein Sequence
Length: 221
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.579 | 0.631 | 0.658 | 0.468 | 1.508 | 1.624 | 0.539 | 1.584 | 1.006 | 1.529 | 0.891 | 1.597 | 1.508 | 0.609 | 1.108 | 1.034 | 0.964 | 0.96 | 1.392 | 1.331 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5365
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — | — | — | — | — |
1-26
|
0.994
|
1.000
|
0.000
|
0.000
|
0.039
|
0.241
|
0.013
|
0.156
|
0.655
|
0.258
|
0.680
|
0.239
|
0.453
|
0.010
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007769
|
1.000
|
1.000
|
Hsc_gene_5809.t1
|
Hsc_gene_5809.t1
|
— |
B3MTS8.1 Transmembrane emp24 domain-containing protein eca [Drosophila ananassae]
|
KAI1719126.1 emp24/gp25L/p24 family/GOLD domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.927|GO:0110165_0.920|GO:0005622_0.817|GO:0016020_0.811|GO:0071944_0.724|GO:0005886_0.718|GO:0005737_0.716|GO:0043226_0.712|GO:0008150_0.694|GO:0043229_0.688|GO:0043227_0.675|GO:0043231_0.659|GO:0009987_0.646|GO:0005773_0.590|GO:0012505_0.571
|
IPR009038+26-216_36-131+|IPR015720+11-216+
|
SM01190+26-216+
|
PF01105+26-216+emp24/gp25L/p24_family/GOLD
|
— |
PTHR22811+11-216+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-221
|
9cjl_L
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.566
|
25827.550
|
6.606
|
0.500
|
27.149
|
14.932
|
49.321
|
50.679
|
14.480
|
12.670
|
39.819
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
2926.802
|
1284.800
|
1767.081
|
2421.713
|
2711.108
|
2621.855
|
2769.158
|
1930.407
|
5559.090
|
2820.645
|
3994.264
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.231
|
0.778
|
0.563
|
0.131
|
— | — |
-0.545
|
0.662
|
— | — | — | — | — |