Hg_chrom3_TN10mRNA_5648
Organism: Heterodera glycines Gene Locus: chr3:7058952-7061748 Feature type: polypeptideProtein Sequence
Length: 498
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.887 | 1.074 | 0.548 | 1.108 | 1.004 | 1.442 | 0.861 | 1.506 | 0.759 | 1.085 | 0.943 | 1.063 | 1.785 | 0.734 | 1.557 | 1.004 | 0.889 | 0.913 | 1.39 | 0.591 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5366
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KRRTEEKPKKAMARQETTEGKAKKGAKGSGKERWTLVPVKRKEEGKKQVG
|
— | — | — | — |
1-28
|
0.756
|
0.787
|
0.000
|
0.000
|
0.195
|
0.188
|
0.045
|
0.272
|
0.172
|
0.305
|
0.381
|
0.033
|
0.169
|
0.709
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003608
|
1.000
|
2.000
|
Hsc_gene_5810.t1;Hsc_gene_5810.t2
|
Hsc_gene_5810.t1;Hsc_gene_5810.t2
|
— |
Q9XTR8.1 Lipase ZK262.3 [Caenorhabditis elegans]
|
NP_499623.2 Fungal lipase-like domain-containing protein [Caenorhabditis elegans];CAB11554.2 Fungal lipase-like domain-containing protein [Caenorhabditis elegans]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006629
|
GO:0003674_0.879|GO:0005575_0.735|GO:0110165_0.732|GO:0008150_0.727|GO:0003824_0.707|GO:0009987_0.683|GO:0016787_0.681|GO:0016788_0.661|GO:0052689_0.650|GO:0008152_0.556|GO:0044238_0.556|GO:0043170_0.547
|
IPR002921+291-432+|IPR029058+267-494_286-471+
|
— |
PF01764+291-432+Lipase_(class_3)
|
— |
PTHR45908+271-471+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
105-239
|
2.000
|
1-104;240-498
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.778
|
56445.500
|
9.914
|
31.500
|
25.904
|
13.253
|
48.594
|
51.406
|
16.867
|
9.036
|
47.992
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
841.572
|
379.939
|
61.258
|
51.197
|
562.095
|
2162.470
|
151.565
|
190.322
|
3.792
|
2344.464
|
1341.319
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.858
|
-3.029
|
— |
3.425
|
1.960
|
-3.825
|
-3.616
|
— |
-6.716
|
4.014
|
— | — | — |