Hg_chrom3_TN10mRNA_5649
Organism: Heterodera glycines Gene Locus: chr3:7062246-7062961 Feature type: polypeptideProtein Sequence
Length: 156
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.82 | 1.491 | 0.583 | 2.21 | 0.748 | 0.986 | 0.305 | 1.282 | 1.14 | 1.299 | 0.583 | 1.508 | 1.959 | 0.863 | 1.047 | 1.099 | 1.156 | 1.263 | 0.0 | 0.754 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5367
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
cell_membrane
|
— | — | — | — | — | — |
1-19
|
0.989
|
1.000
|
1.000
|
1.000
|
0.022
|
0.112
|
0.004
|
0.051
|
0.192
|
0.109
|
0.073
|
0.021
|
0.838
|
0.214
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007770
|
1.000
|
1.000
|
Hsc_gene_5811.t1
|
Hsc_gene_5811.t1
|
— | — |
KAI3415826.1 hypothetical protein GPALN_005399 [Globodera pallida]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030431|GO:0032222|GO:1903818
|
— |
IPR031424+21-131+|IPR045860+57-135+|IPR050975+6-152+
|
— |
PF17064+21-131+Quiver_family_u-PAR/Ly-6-like_domain
|
— |
PTHR33562+6-152+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-156
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.739
|
17540.380
|
7.761
|
4.000
|
19.231
|
12.179
|
44.231
|
55.769
|
11.538
|
7.692
|
53.205
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
27.728
|
68.731
|
67.383
|
26.948
|
20.202
|
38.707
|
23.754
|
26.604
|
1.382
|
18.150
|
10.964
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.488
|
-1.216
|
— |
0.954
|
-0.692
|
-0.644
|
— | — |
4.614
|
— | — | — |