SCN Proteipedia

Hg_chrom3_TN10mRNA_5651

Organism: Heterodera glycines Gene Locus: chr3:7065862-7077365 Feature type: polypeptide

Protein Sequence

Length: 2,608

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.852	1.302	0.955	0.608	1.278	1.101	0.712	1.131	1.04	1.358	0.767	0.97	1.299	0.789	1.127	1.517	0.905	0.877	0.531	0.44	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5369	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Egg_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	KVKK,RFDKRKG	—	—	—	—	—	—	0.000	—	—	0.579	0.145	0.011	0.591	0.174	0.206	0.324	0.042	0.155	0.027

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007772	1.000	1.000	Hsc_gene_5813.t1	Hsc_gene_5813.t1	—	V6CLA2.1 E3 ubiquitin-protein ligase hecd-1 [Caenorhabditis elegans]	KAI3415824.1 Mib_herc2 protein [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004842\|GO:0005515\|GO:0006511\|GO:0061630	GO:0008150_0.913\|GO:0009987_0.829\|GO:0065007_0.739\|GO:0050789_0.705\|GO:0008152_0.698\|GO:0044238_0.674\|GO:0043170_0.668\|GO:0005575_0.658\|GO:0050794_0.654\|GO:0110165_0.651\|GO:0019538_0.599\|GO:0005622_0.566\|GO:0048519_0.535\|GO:0032502_0.530\|GO:0048856_0.530\|GO:0048523_0.523	IPR000569+2184-2606_2197-2608_2208-2608_2286-2607+\|IPR002110+373-451_389-418_420-449_420-452_453-485+\|IPR011989+9-354+\|IPR016024+8-635+\|IPR035983+2178-2600+\|IPR036770+355-490_360-485+\|IPR045322+9-2608+	SM00119+2197-2608+\|SM00248+389-418_420-449_453-485+	PF00632+2286-2607+HECT-domain_(ubiquitin-transferase)\|PF12796+373-451+Ankyrin_repeats_(3_copies)	G3DSA:3.30.2410.10:FF:000007+2494-2608+Putative_E3_ubiquitin-protein_ligase_HECTD1	PTHR45670+9-2608+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	640-776;1204-1747;1827-1959	4.000	1-639;777-1203;1748-1826;1960-2608	7qpb_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.683	288145.930	5.604	-31.500	25.767	9.126	51.802	48.198	12.845	12.922	51.956

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	9177.069	11345.357	7562.798	7775.737	7059.103	8741.083	8627.749	12599.994	10028.901	8736.068	9290.139

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.814	-0.682	0.148	-0.171	0.323	—	0.421	-0.404	—	—	—	—	—

No JSON data available for plots.

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