Hg_chrom3_TN10mRNA_5653
Organism: Heterodera glycines Gene Locus: chr3:7086412-7088192 Feature type: polypeptideProtein Sequence
Length: 327
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.889 | 1.209 | 0.89 | 0.844 | 1.274 | 1.882 | 1.019 | 1.682 | 0.883 | 1.116 | 0.324 | 0.54 | 1.699 | 1.764 | 1.186 | 0.524 | 0.551 | 1.297 | 0.235 | 0.18 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5371
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.390
|
0.311
|
0.038
|
0.571
|
0.262
|
0.336
|
0.104
|
0.009
|
0.271
|
0.607
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007773
|
1.000
|
1.000
|
Hsc_gene_5814.t1
|
Hsc_gene_5814.t1
|
— |
O44126.1 32 kDa beta-galactoside-binding lectin [Haemonchus contortus]
|
KAI3415823.1 Lectin, galactoside-binding, soluble [Globodera pallida]
|
No
|
-0.460
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030246
|
GO:0005575_0.810|GO:0110165_0.779|GO:0008150_0.699|GO:0009987_0.614|GO:0065007_0.539|GO:0003674_0.533|GO:0050789_0.522|GO:0005622_0.514|GO:0050794_0.511|GO:0016020_0.505
|
IPR001079+8-135_14-135_18-134_21-133_196-327_197-324_197-327_201-326_205-325+|IPR013320+20-134_194-326+|IPR044156+21-131+
|
SM00276+14-135_196-327+|SM00908+18-134_201-326+
|
PF00337+21-133_205-325+Galactoside-binding_lectin
|
— |
PTHR11346+21-131+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
123-208
|
2.000
|
1-122;209-327
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.535
|
35897.450
|
4.964
|
-9.500
|
23.853
|
10.398
|
43.425
|
56.575
|
11.315
|
12.538
|
53.517
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
2649.260
|
8769.033
|
3909.823
|
534.627
|
961.320
|
3188.271
|
1968.050
|
9442.461
|
280.586
|
589.980
|
457.382
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.394
|
-4.173
|
-2.763
|
0.815
|
1.742
|
-0.684
|
1.464
|
-2.120
|
— | — | — | — | — |
No JSON data available for plots.