Hg_chrom3_TN10mRNA_5654
Organism: Heterodera glycines Gene Locus: chr3:7088226-7090511 Feature type: polypeptideProtein Sequence
Length: 478
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.851 | 0.924 | 1.065 | 0.505 | 2.162 | 0.805 | 0.897 | 1.36 | 0.79 | 0.82 | 1.046 | 1.354 | 0.814 | 0.764 | 1.58 | 1.136 | 1.029 | 0.729 | 0.805 | 0.431 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5372
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.665
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKRPS,REQKRRT,KRRFINEKIVKKGKL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.857
|
0.116
|
0.025
|
0.228
|
0.013
|
0.029
|
0.042
|
0.014
|
0.081
|
0.180
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007774
|
1.000
|
1.000
|
Hsc_gene_5815.t1
|
Hsc_gene_5815.t1
|
— |
P05552.2 Transcription factor Adf-1 [Drosophila melanogaster]
|
KAI1694399.1 alcohol dehydrogenase transcription factor myb/SANT-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— |
GO:0008150_0.946|GO:0005575_0.944|GO:0110165_0.941|GO:0009987_0.909|GO:0005622_0.883|GO:0065007_0.881|GO:0003674_0.855|GO:0005488_0.853|GO:0050789_0.852|GO:0050794_0.846|GO:0043226_0.842|GO:0043229_0.815|GO:0008152_0.774|GO:0043170_0.774|GO:0019222_0.762|GO:0044238_0.761|GO:0009058_0.759|GO:0009059_0.759|GO:0010467_0.759|GO:0044237_0.759|GO:0044249_0.759|GO:0031323_0.757|GO:0006139_0.754|GO:0060255_0.751|GO:0080090_0.750|GO:0034654_0.743|GO:0009889_0.737|GO:0010556_0.737|GO:0031326_0.737|GO:0016070_0.736|GO:0090304_0.736|GO:0032774_0.731|GO:0141187_0.731|GO:0097159_0.730|GO:0010468_0.727|GO:0043228_0.721|GO:0043232_0.721|GO:0003676_0.716|GO:0019219_0.715|GO:0051252_0.715|GO:0006351_0.709|GO:2001141_0.707|GO:0006355_0.704|GO:0006366_0.697|GO:0006357_0.695|GO:0003677_0.675|GO:0003690_0.668|GO:0043565_0.668|GO:0140110_0.667|GO:1990837_0.665|GO:0000976_0.662|GO:0001067_0.662|GO:0003700_0.659|GO:0000977_0.658|GO:0000785_0.655|GO:0000981_0.655|GO:0005694_0.655
|
IPR006578+154-238_155-233+|IPR039353+146-467+
|
SM00595+154-238+
|
PF10545+155-233+Alcohol_dehydrogenase_transcription_factor_Myb/SANT-like
|
— |
PTHR12243+146-467+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-192;243-426;478-478
|
2.000
|
193-242;427-477
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.552
|
53640.320
|
5.090
|
-13.500
|
36.192
|
8.159
|
57.531
|
42.469
|
17.364
|
18.828
|
49.163
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
1349.435
|
2942.311
|
2062.450
|
986.087
|
975.810
|
1926.787
|
969.961
|
1416.673
|
939.889
|
968.832
|
956.428
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.742
|
-1.714
|
-0.956
|
— |
0.997
|
-0.980
|
-0.549
|
-0.403
|
— | — | — | — | — |
No JSON data available for plots.