Hg_chrom3_TN10mRNA_5656
Organism: Heterodera glycines Gene Locus: chr3:7091882-7094236 Feature type: polypeptideProtein Sequence
Length: 236
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.788 | 1.38 | 1.002 | 1.315 | 1.271 | 0.543 | 0.757 | 1.907 | 1.507 | 0.973 | 0.77 | 1.246 | 1.412 | 0.652 | 1.384 | 0.726 | 0.764 | 1.091 | 1.304 | 0.872 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5374
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.522
|
0.203
|
0.012
|
0.568
|
0.137
|
0.235
|
0.222
|
0.006
|
0.269
|
0.276
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007776
|
1.000
|
1.000
|
Hsc_gene_5817.t1
|
Hsc_gene_5817.t1;Hsc_gene_5817.t2;Hsc_gene_5817.t3
|
— |
Q6DK85.1 Putative potassium channel regulatory protein [Xenopus tropicalis]
|
KAF7638270.1 BTB_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0051260
|
GO:0008150_0.753|GO:0003674_0.713|GO:0005575_0.689|GO:0110165_0.688|GO:0009987_0.643|GO:0016020_0.559
|
IPR000210+13-113+|IPR003131+15-102+|IPR011333+8-120_13-109+
|
SM00225+13-113+
|
PF02214+15-102+BTB/POZ_domain
|
— |
PTHR14499+11-132+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-236
|
4zgc_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.555
|
26931.710
|
6.747
|
1.500
|
28.814
|
13.559
|
46.610
|
53.390
|
15.678
|
13.136
|
48.729
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
206.513
|
635.614
|
712.643
|
262.987
|
95.574
|
59.856
|
133.298
|
188.884
|
137.675
|
16.918
|
68.671
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.410
|
-1.328
|
-1.492
|
-0.661
|
1.166
|
1.557
|
— | — | — | — | — | — |
No JSON data available for plots.