SCN Proteipedia

Hg_chrom3_TN10mRNA_5664

Organism: Heterodera glycines Gene Locus: chr3:7127041-7131445 Feature type: polypeptide

Protein Sequence

Length: 491

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.947	1.089	0.852	0.632	0.916	2.35	1.091	2.648	0.679	1.018	0.525	2.156	0.792	1.057	0.499	1.367	1.135	0.586	0.313	0.659	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5382	—	—	0.889	1.000	1.000	1.000	1.000	—	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.507

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKSHKK	—	—	—	—	—	—	0.000	—	—	0.860	0.096	0.007	0.399	0.102	0.051	0.064	0.006	0.050	0.043

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000819	1.000	5.000	Hsc_gene_5825.t1;Hsc_gene_5825.t2;Hsc_gene_5825.t3;Hsc_gene_5825.t4;Hsc_gene_5825.t5	Hsc_gene_5825.t1;Hsc_gene_5825.t2;Hsc_gene_5825.t3;Hsc_gene_5825.t4	—	Q9N5D6.1 Homeobox protein unc-62 [Caenorhabditis elegans]	KAI1719093.1 homeobox protein unc-62 [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.829\|GO:0003674_0.820\|GO:0005575_0.814\|GO:0110165_0.812\|GO:0005488_0.808\|GO:0009987_0.781\|GO:0065007_0.778\|GO:0050789_0.773\|GO:0050794_0.762\|GO:0005622_0.730\|GO:0008152_0.658\|GO:0019222_0.658\|GO:0097159_0.657\|GO:0031323_0.653\|GO:0044237_0.653\|GO:0003676_0.647\|GO:0016020_0.647\|GO:0043170_0.645\|GO:0060255_0.643\|GO:0043226_0.641\|GO:0044238_0.637\|GO:0080090_0.637\|GO:0043229_0.626\|GO:0003677_0.624\|GO:0009058_0.624\|GO:0009059_0.624\|GO:0010467_0.624\|GO:0044249_0.624\|GO:0009889_0.619\|GO:0031326_0.619\|GO:0010468_0.615\|GO:0010556_0.615\|GO:0006139_0.600\|GO:0034654_0.600\|GO:0016070_0.596\|GO:0019219_0.596\|GO:0051252_0.596\|GO:0090304_0.596\|GO:0048518_0.591\|GO:0141187_0.591\|GO:0032774_0.589\|GO:0006351_0.588\|GO:0006355_0.588\|GO:2001141_0.588\|GO:0048522_0.582\|GO:0043565_0.574\|GO:0006366_0.563\|GO:0043227_0.557\|GO:0043231_0.545\|GO:0009893_0.542\|GO:0031325_0.537\|GO:0010604_0.533\|GO:0006357_0.528\|GO:0003690_0.527\|GO:1990837_0.527\|GO:0009891_0.525\|GO:0031328_0.518\|GO:0010557_0.515\|GO:0032502_0.511\|GO:0048856_0.511	IPR032453+140-217+	—	PF16493+140-217+N-terminal_of_Homeobox_Meis_and_PKNOX1	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-1;209-491	1.000	2-208	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.645	53008.560	5.934	-8.000	21.385	10.794	51.731	48.269	11.202	10.183	54.379

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	magenta	620.497	1261.575	1178.346	783.419	738.670	958.139	865.690	814.978	49.756	202.052	136.782

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.328	-0.825	-0.481	—	0.391	—	-0.338	—	—	—	—	—	—

No JSON data available for plots.

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