Hg_chrom3_TN10mRNA_5670
Organism: Heterodera glycines Gene Locus: chr3:7155002-7156800 Feature type: polypeptideProtein Sequence
Length: 382
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.974 | 1.765 | 0.524 | 0.722 | 0.829 | 1.074 | 0.623 | 2.356 | 1.629 | 0.955 | 0.595 | 1.232 | 1.818 | 0.906 | 1.763 | 0.785 | 0.815 | 0.952 | 0.604 | 0.616 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5388
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKH
|
— | — | — | — | — | — |
0.000
|
— | — |
0.769
|
0.181
|
0.056
|
0.284
|
0.150
|
0.018
|
0.034
|
0.014
|
0.123
|
0.344
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003610
|
2.000
|
1.000
|
Hsc_gene_24971.t1
|
Hsc_gene_4558.t1
|
— | — |
ODM87485.1 FLYWCH-type zinc finger-containing protein 1 [Orchesella cincta]
|
No
|
-0.410
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR007588+310-363+|IPR018289+131-221+
|
— |
PF04500+310-363+FLYWCH_zinc_finger_domain|PF10551+131-221+MULE_transposase_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-51;379-382
|
1.000
|
52-378
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.793
|
43575.990
|
10.336
|
27.000
|
25.131
|
14.136
|
47.382
|
52.618
|
17.277
|
7.853
|
47.644
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
brown
|
52.539
|
54.372
|
116.276
|
87.624
|
75.138
|
92.251
|
64.341
|
72.145
|
23.198
|
1.656
|
10.888
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.868
|
0.552
|
-0.300
|
— | — |
-0.512
|
-0.463
|
— | — | — |
4.857
|
— | — |
No JSON data available for plots.