Hg_chrom3_TN10mRNA_5671
Organism: Heterodera glycines Gene Locus: chr3:7157636-7159991 Feature type: polypeptideProtein Sequence
Length: 494
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.636 | 0.847 | 0.957 | 0.489 | 1.046 | 1.142 | 0.892 | 1.417 | 1.484 | 1.012 | 1.166 | 1.905 | 1.743 | 0.74 | 1.198 | 0.954 | 0.531 | 1.073 | 1.09 | 1.072 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5389
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
8-28
|
0.994
|
— | — | — | — |
0.009
|
— | — |
0.130
|
0.936
|
0.011
|
0.196
|
0.077
|
0.057
|
0.053
|
0.010
|
0.108
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007785
|
1.000
|
1.000
|
Hsc_gene_5829.t3
|
Hsc_gene_5829.t1;Hsc_gene_5829.t2;Hsc_gene_5829.t3
|
— |
O01541.1 Alanine--tRNA ligase, cytoplasmic [Caenorhabditis elegans]
|
KAI1726259.1 tRNA synthetases class II (A) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0003676|GO:0004813|GO:0005524|GO:0005737|GO:0006419
|
GO:0005575_0.803|GO:0110165_0.802|GO:0005622_0.746|GO:0005737_0.700|GO:0016020_0.672|GO:0008150_0.632|GO:0043226_0.598|GO:0003674_0.594|GO:0043227_0.548|GO:0009987_0.538|GO:0043229_0.527
|
IPR002318+104-115_233-244_260-273_318-334+|IPR018162+280-478+|IPR018164+34-485+|IPR018165+30-494+|IPR045864+30-276_30-279+|IPR050058+30-478+
|
— |
PF01411+34-485+tRNA_synthetases_class_II_(A)
|
G3DSA:3.30.930.10:FF:000011+29-276+Alanine--tRNA_ligase,_cytoplasmic
|
PTHR11777+30-478+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-494
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.793
|
56587.190
|
9.229
|
17.000
|
27.935
|
14.170
|
45.951
|
54.049
|
16.397
|
11.538
|
44.130
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
saddlebrown
|
1384.988
|
1620.218
|
2120.553
|
1592.095
|
1462.914
|
1307.191
|
1176.887
|
1908.935
|
1259.265
|
919.078
|
1064.872
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.159
|
-0.162
|
-0.305
|
-0.154
|
-0.148
|
— |
0.441
|
-0.556
|
— | — | — | — | — |
No JSON data available for plots.