Hg_chrom3_TN10mRNA_5673
Organism: Heterodera glycines Gene Locus: chr3:7162222-7163838 Feature type: polypeptideProtein Sequence
Length: 394
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.092 | 0.59 | 0.6 | 0.35 | 1.1 | 0.716 | 1.148 | 1.777 | 1.636 | 1.372 | 0.731 | 1.792 | 1.622 | 0.781 | 1.036 | 1.378 | 0.832 | 0.769 | 0.39 | 0.149 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5391
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— |
RKGAIGQGKTARDRRKKDA,GAIGQGKTARDRRKKDAKA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.066
|
0.070
|
0.015
|
0.106
|
0.522
|
0.727
|
0.632
|
0.019
|
0.457
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007787
|
1.000
|
1.000
|
Hsc_gene_5831.t1
|
Hsc_gene_5831.t1
|
— |
Q6NRM1.1 Zinc transporter ZIP9-B [Xenopus laevis]
|
KAI1719155.1 ZIP zinc transporter domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006829|GO:0016020|GO:0030001|GO:0046873|GO:0055085
|
GO:0008150_0.916|GO:0009987_0.841|GO:0005575_0.682|GO:0110165_0.677|GO:0003674_0.642|GO:0016020_0.632|GO:0051179_0.579|GO:0006810_0.570|GO:0051234_0.570|GO:0005622_0.543|GO:0071944_0.525|GO:0005886_0.517|GO:0065007_0.516|GO:0050789_0.502
|
IPR003689+9-334+|IPR045891+6-388+
|
— |
PF02535+9-334+ZIP_Zinc_transporter
|
— |
PTHR16133+6-388+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
68-164
|
2.000
|
1-67;165-394
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.803
|
42444.860
|
7.605
|
7.000
|
23.350
|
10.406
|
43.401
|
56.599
|
13.452
|
9.898
|
49.746
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellowgreen
|
763.169
|
518.617
|
812.328
|
853.481
|
1016.761
|
1177.253
|
887.554
|
1045.656
|
544.913
|
563.310
|
555.426
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.418
|
0.581
|
0.180
|
0.220
|
0.227
|
-0.398
|
-0.275
|
— | — | — | — | — | — |
No JSON data available for plots.