Hg_chrom3_TN10mRNA_5674
Organism: Heterodera glycines Gene Locus: chr3:7164041-7166671 Feature type: polypeptideProtein Sequence
Length: 229
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.32 | 0.812 | 0.953 | 0.452 | 1.31 | 1.344 | 0.832 | 0.655 | 1.067 | 1.298 | 0.86 | 1.541 | 0.607 | 1.176 | 1.515 | 0.624 | 0.573 | 1.323 | 0.336 | 0.514 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5392
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.453
|
0.550
|
0.154
|
0.424
|
0.148
|
0.410
|
0.262
|
0.045
|
0.172
|
0.575
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007788
|
1.000
|
1.000
|
Hsc_gene_5832.t1
|
Hsc_gene_5832.t1
|
— |
P9WHK0.1 Putative phosphoribosyl transferase MT0597 [Mycobacterium tuberculosis CDC1551]
|
KAF7627188.1 Pribosyltran domain-containing protein [Meloidogyne graminicola]
|
HEX6441850
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.888|GO:0110165_0.874|GO:0005622_0.819|GO:0005737_0.765|GO:0071944_0.668|GO:0005829_0.645|GO:0030312_0.570|GO:0005618_0.563|GO:0009274_0.556|GO:0016020_0.505
|
IPR000836+16-191_18-195+|IPR029057+9-220_10-214+|IPR052036+12-221+
|
— |
PF00156+18-195+Phosphoribosyl_transferase_domain
|
— |
PTHR31299+12-221+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
229-229
|
1.000
|
1-228
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.653
|
25094.850
|
7.218
|
1.500
|
27.511
|
5.677
|
44.105
|
55.895
|
14.410
|
13.100
|
51.092
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1708.357
|
2407.866
|
1337.979
|
1111.639
|
1179.485
|
1508.482
|
1279.003
|
2374.152
|
2144.244
|
1666.401
|
1871.191
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.077
|
-1.252
|
-0.159
|
— |
0.369
|
-0.227
|
0.548
|
-0.748
|
— | — | — | — | — |
No JSON data available for plots.