SCN Proteipedia

Hg_chrom3_TN10mRNA_5675

Organism: Heterodera glycines Gene Locus: chr3:7167690-7174975 Feature type: polypeptide

Protein Sequence

Length: 1,418

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.664	1.0	1.09	0.486	1.375	1.483	0.487	1.481	1.191	1.544	0.791	1.162	1.783	0.922	1.439	0.675	0.682	0.994	0.868	0.788	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5393	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	0.984

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm\|nucleus	—	KRQRDFLLEQNPKMKKI	35-76	0.935	—	—	—	—	0.000	—	—	0.555	0.247	0.032	0.531	0.127	0.261	0.081	0.048	0.151	0.065

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007789	1.000	1.000	Hsc_gene_5833.t1	Hsc_gene_5833.t1	—	O60306.4 RNA helicase aquarius [Homo sapiens]	KAI1719113.1 AAA domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000398\|GO:0004386\|GO:0005681	GO:0008150_0.915\|GO:0005575_0.849\|GO:0110165_0.845\|GO:0009987_0.804\|GO:0005622_0.794\|GO:0003674_0.701\|GO:0008152_0.692\|GO:0043226_0.688\|GO:0043229_0.671\|GO:0016020_0.658\|GO:0043170_0.655\|GO:0044238_0.653\|GO:0044237_0.575\|GO:0009058_0.568\|GO:0006139_0.566\|GO:0005737_0.564\|GO:0090304_0.552\|GO:0043227_0.549\|GO:0065007_0.547\|GO:0044249_0.545\|GO:0009059_0.529\|GO:0043231_0.525\|GO:0050789_0.522	IPR026300+14-1413+\|IPR027417+709-1094_751-1303_1099-1290+\|IPR032174+23-375+\|IPR041677+756-1066+\|IPR041679+1076-1267+\|IPR045055+275-1386+\|IPR047187+1101-1284+\|IPR048966+462-622+\|IPR048967+672-728+	—	PF13086+756-1066+AAA_domain\|PF13087+1076-1267+AAA_domain\|PF16399+23-375+Intron-binding_protein_aquarius_N-terminal\|PF21143+462-622+Intron-binding_protein_aquarius,_beta-barrel\|PF21144+672-728+Intron-binding_protein_aquarius_insert_domain	G3DSA:3.40.50.300:FF:002863+1099-1294+Pre-mRNA-splicing_factor_cwf11\|G3DSA:3.40.50.300:FF:003210+953-1097+RNA_helicase_aquarius	PTHR10887+275-1386+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-1;1344-1418	1.000	2-1343	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.602	165168.050	6.247	-7.000	29.478	13.188	48.449	51.551	15.233	14.245	41.749

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	3713.057	6926.812	4074.439	4756.709	4731.459	4425.278	4205.571	3731.893	2474.189	2069.421	2242.893

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.994	-0.679	0.331	—	—	—	-0.350	0.314	—	—	—	—	—

No JSON data available for plots.

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