Hg_chrom3_TN10mRNA_5678
Organism: Heterodera glycines Gene Locus: chr3:7179822-7182121 Feature type: polypeptideProtein Sequence
Length: 468
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.242 | 1.093 | 0.738 | 0.663 | 0.855 | 0.931 | 0.865 | 1.175 | 1.14 | 1.386 | 1.068 | 1.257 | 1.603 | 0.657 | 1.047 | 1.129 | 0.736 | 1.036 | 0.493 | 0.44 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5396
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.851
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
14-35
|
0.968
|
9-39
|
1.000
|
— | — |
0.000
|
— | — |
0.116
|
0.938
|
0.029
|
0.232
|
0.043
|
0.054
|
0.038
|
0.133
|
0.056
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007792
|
1.000
|
1.000
|
Hsc_gene_5836.t1
|
Hsc_gene_5836.t1
|
— |
P34255.1 Probable 3-ketoacyl-CoA thiolase [Caenorhabditis elegans]
|
KAI1719110.1 3-ketoacyl-CoA thiolase [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016746|GO:0016747
|
GO:0005575_0.862|GO:0110165_0.845|GO:0005622_0.786|GO:0005737_0.727|GO:0008150_0.708|GO:0016020_0.708|GO:0003674_0.665|GO:0043226_0.663|GO:0043229_0.661|GO:0043227_0.629|GO:0009987_0.620|GO:0043231_0.607|GO:0003824_0.545|GO:0008152_0.528
|
IPR002155+42-462_44-461+|IPR016039+33-462_41-321_324-462+|IPR020610+444-457+|IPR020613+409-425+|IPR020616+42-315+|IPR020617+323-461+
|
— |
PF00108+42-315+Thiolase,_N-terminal_domain|PF02803+323-461+Thiolase,_C-terminal_domain
|
G3DSA:3.40.47.10:FF:000011+34-462+3-ketoacyl-CoA_thiolase
|
PTHR18919+41-463+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-468
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.874
|
51105.980
|
9.709
|
19.500
|
23.718
|
10.256
|
44.444
|
55.556
|
14.530
|
9.188
|
51.282
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
red
|
3594.144
|
2049.182
|
4427.731
|
2867.421
|
3821.301
|
4766.258
|
3694.664
|
7804.531
|
1984.147
|
3199.613
|
2678.699
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.883
|
0.348
|
-0.519
|
0.382
|
0.334
|
-0.358
|
0.608
|
-0.938
|
— | — | — | — | — |
No JSON data available for plots.