Hg_chrom3_TN10mRNA_5682
Organism: Heterodera glycines Gene Locus: chr3:7191193-7192373 Feature type: polypeptideProtein Sequence
Length: 293
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.833 | 1.111 | 0.807 | 0.706 | 1.65 | 0.875 | 0.284 | 0.512 | 1.441 | 1.199 | 1.345 | 1.205 | 2.181 | 0.656 | 1.045 | 1.024 | 0.671 | 0.931 | 1.575 | 0.803 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5400
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.710
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
RTFKRIR
|
17-38
|
0.995
|
— | — | — | — |
0.000
|
— | — |
0.566
|
0.207
|
0.014
|
0.527
|
0.220
|
0.060
|
0.100
|
0.182
|
0.093
|
0.235
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003611
|
1.000
|
2.000
|
Hsc_gene_16017.t1;Hsc_gene_21964.t1
|
Hsc_gene_1327.t1;Hsc_gene_14605.t1;Hsc_gene_14878.t1;Hsc_gene_16017.t1;Hsc_gene_21964.t1
|
— | — |
KAH7707419.1 voltage-dependent calcium channel subunit alpha-2/delta-1-like protein [Aphelenchus avenae]
|
No
|
-0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR012337+12-283+
|
— | — | — |
PTHR37162+15-283+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-293
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.505
|
34219.420
|
6.708
|
0.500
|
29.352
|
13.652
|
48.805
|
51.195
|
15.017
|
14.334
|
41.638
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
blue
|
14.335
|
2.434
|
16.402
|
4.234
|
9.647
|
8.660
|
7.902
|
19.319
|
1.382
|
35.953
|
21.137
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.522
|
— |
-1.853
|
1.164
|
— | — |
1.050
|
-1.147
|
— | — | — | — | — |
No JSON data available for plots.