Hg_chrom3_TN10mRNA_5685
Organism: Heterodera glycines Gene Locus: chr3:7196236-7199190 Feature type: polypeptideProtein Sequence
Length: 652
(Signal peptide: 1-34)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.767 | 0.749 | 0.837 | 0.582 | 2.352 | 1.455 | 0.931 | 2.684 | 1.022 | 1.078 | 1.185 | 1.714 | 0.724 | 0.236 | 1.753 | 0.723 | 0.528 | 0.604 | 0.944 | 0.496 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5402
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RRRRS
|
— | — | — | — |
1-34
|
— |
0.660
|
— |
0.000
|
0.144
|
0.058
|
0.008
|
0.203
|
0.231
|
0.212
|
0.239
|
0.003
|
0.080
|
0.833
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003612
|
2.000
|
1.000
|
Hsc_gene_5841.t1
|
Hsc_gene_5841.t1
|
— |
Q06811.2 Polyprotein ABA-1 [Ascaris suum]
|
AAL78215.1 probable polyprotein allergen Hgg-14, partial [Heterodera glycines]
|
No
|
-0.400
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR032487+70-174_221-341_395-511_526-646+|IPR038289+62-177_213-346_386-514_520-649+
|
— |
PF16469+70-174_221-341_395-511_526-646+Nematode_polyprotein_allergen_ABA-1
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
114-438;583-652
|
2.000
|
1-113;439-582
|
2xv9_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.645
|
75579.740
|
6.628
|
2.500
|
40.491
|
10.890
|
57.669
|
42.331
|
21.779
|
18.712
|
37.423
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
14215.231
|
30931.774
|
25123.178
|
10169.652
|
11182.971
|
11205.256
|
10129.449
|
17050.280
|
15674.613
|
7013.467
|
10725.386
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.528
|
-1.742
|
-1.197
|
— | — | — |
0.503
|
-0.608
|
— | — | — | — | — |