Hg_chrom3_TN10mRNA_5688
Organism: Heterodera glycines Gene Locus: chr3:7203355-7205657 Feature type: polypeptideProtein Sequence
Length: 330
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.423 | 0.846 | 1.322 | 1.463 | 0.96 | 1.088 | 0.794 | 1.212 | 1.077 | 1.392 | 0.367 | 1.426 | 1.178 | 1.049 | 1.175 | 1.039 | 0.546 | 1.377 | 1.632 | 1.426 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5405
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-Not_Clustered
|
0.507
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.576
|
0.232
|
0.271
|
0.718
|
0.253
|
0.262
|
0.173
|
0.054
|
0.113
|
0.008
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007796
|
1.000
|
1.000
|
Hsc_gene_5843.t1
|
Hsc_gene_5843.t1
|
— |
Q09496.2 Serine/threonine-protein phosphatase 6 catalytic subunit [Caenorhabditis elegans]
|
KAI1728269.1 calcineurin-like phosphoesterase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004722|GO:0016787
|
GO:0008150_0.810|GO:0005575_0.733|GO:0009987_0.695|GO:0110165_0.684|GO:0003674_0.618|GO:0005622_0.615|GO:0065007_0.592|GO:0050789_0.576|GO:0005737_0.549|GO:0003824_0.533
|
IPR004843+72-264+|IPR006186+42-314_70-97_99-126_132-156_133-138_167-193_196-223_253-273_275-291+|IPR029052+26-312_26-330+|IPR047129+31-329+
|
SM00156+42-314+
|
PF00149+72-264+Calcineurin-like_phosphoesterase
|
— |
PTHR45619+31-329+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-11
|
1.000
|
12-330
|
8uo5_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.616
|
37644.930
|
4.635
|
-12.000
|
23.636
|
13.636
|
42.121
|
57.879
|
10.606
|
13.030
|
50.606
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
930.051
|
946.628
|
1041.378
|
1165.882
|
1256.774
|
958.673
|
1073.022
|
1048.844
|
304.478
|
1031.412
|
719.869
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.164
|
0.273
|
— |
-0.376
|
0.173
|
— | — | — | — | — | — | — |
No JSON data available for plots.