SCN Proteipedia

Hg_chrom3_TN10mRNA_5692

Organism: Heterodera glycines Gene Locus: chr3:7225460-7226780 Feature type: polypeptide

Protein Sequence

Length: 155

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.375	0.75	1.525	0.89	0.968	0.662	0.922	0.968	1.004	1.482	0.684	2.277	1.434	1.489	1.317	0.829	0.529	1.173	1.489	0.759	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5409	—	—	0.889	1.000	1.000	1.000	1.000	—	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide	extracellular	—	—	—	—	—	—	—	—	0.247	—	—	0.250	0.479	0.120	0.318	0.521	0.155	0.215	0.007	0.218	0.864

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007800	1.000	1.000	Hsc_gene_5847.t1	Hsc_gene_5847.t1	—	Q8I7H9.1 Transthyretin-like protein 33 [Caenorhabditis elegans]	KAI1730129.1 transthyretin-like family domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0009986	GO:0008150_0.934\|GO:0005575_0.867\|GO:0110165_0.860\|GO:0003674_0.856\|GO:0009987_0.854\|GO:0005488_0.772\|GO:0005515_0.755\|GO:0016020_0.753\|GO:0032502_0.737\|GO:0048856_0.737\|GO:0071840_0.719\|GO:0016043_0.714\|GO:0051179_0.713\|GO:0006810_0.709\|GO:0051234_0.709\|GO:0043226_0.696\|GO:0008219_0.691\|GO:0012501_0.690\|GO:0005102_0.688\|GO:0071705_0.688\|GO:0006915_0.686\|GO:0006996_0.686\|GO:0033036_0.685\|GO:0061024_0.684\|GO:0016192_0.680\|GO:0016050_0.678\|GO:0098657_0.677\|GO:0006900_0.675\|GO:0010876_0.675\|GO:0042802_0.675\|GO:0006897_0.674\|GO:0010324_0.674\|GO:0043227_0.674\|GO:0006869_0.670\|GO:0006909_0.670\|GO:0006910_0.670\|GO:0008037_0.670\|GO:0015748_0.670\|GO:0015914_0.670\|GO:0015917_0.670\|GO:0038024_0.670\|GO:0043277_0.670\|GO:0043654_0.670\|GO:0060090_0.670\|GO:1902742_0.670\|GO:0008289_0.659\|GO:0046983_0.659\|GO:0042803_0.658\|GO:0005543_0.654\|GO:0001786_0.650\|GO:0005124_0.650\|GO:0030674_0.650\|GO:0072341_0.650\|GO:0005576_0.648\|GO:0031982_0.588\|GO:0043230_0.566\|GO:0065010_0.566\|GO:1903561_0.566\|GO:0009986_0.563	IPR001534+24-154_43-122+\|IPR038479+37-147+	—	PF01060+43-122+Transthyretin-like_family	—	PTHR21700+24-154+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-155	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.555	17618.300	4.979	-3.500	27.097	11.613	41.935	58.065	12.903	14.194	49.677

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	brown	35.179	55.337	98.441	67.329	36.771	32.670	20.802	66.601	16.233	0.000	6.957

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.600	—	-0.439	-0.906	—	-0.640	0.923	-1.536	—	—	—	—	—

No JSON data available for plots.

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