Hg_chrom3_TN10mRNA_5694
Organism: Heterodera glycines Gene Locus: chr3:7239337-7246874 Feature type: polypeptideProtein Sequence
Length: 893
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.703 | 0.964 | 1.018 | 0.502 | 1.362 | 1.493 | 0.907 | 1.12 | 0.896 | 1.059 | 1.018 | 1.317 | 0.84 | 0.732 | 1.348 | 1.568 | 1.12 | 0.78 | 0.258 | 0.395 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5411
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.655
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|lysosome_vacuole
|
— |
KRKR,RRKKRKQ
|
2-42
|
0.983
|
— | — | — | — |
0.000
|
— | — |
0.252
|
0.330
|
0.139
|
0.532
|
0.429
|
0.593
|
0.389
|
0.042
|
0.441
|
0.124
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007802
|
1.000
|
1.000
|
Hsc_gene_5849.t1
|
Hsc_gene_5849.t1;Hsc_gene_5851.t1;Hsc_gene_5851.t3
|
— |
Q8NI08.2 Nuclear receptor coactivator 7 [Homo sapiens]
|
KAI3415855.1 oxidation resistance protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.954|GO:0009987_0.909|GO:0065007_0.884|GO:0050789_0.873|GO:0050794_0.851|GO:0008152_0.792|GO:0043170_0.792|GO:0019222_0.774|GO:0044238_0.772|GO:0060255_0.761|GO:0080090_0.761|GO:0003674_0.625|GO:0050896_0.583|GO:0005575_0.578|GO:0110165_0.575|GO:0051716_0.554|GO:0048519_0.534|GO:0005622_0.518|GO:0048523_0.517
|
IPR018392+114-157_115-157_115-158_117-158+|IPR036779+103-170_114-158+
|
SM00257+115-158+
|
PF01476+117-158+LysM_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
154-247;312-672
|
3.000
|
1-153;248-311;673-893
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.797
|
98461.840
|
7.028
|
6.000
|
29.339
|
6.943
|
57.111
|
42.889
|
15.566
|
13.774
|
51.624
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
2926.401
|
2122.504
|
1760.026
|
1160.508
|
1171.732
|
1586.561
|
2326.628
|
1298.262
|
1735.485
|
7216.559
|
4867.527
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.499
|
-1.008
|
-0.493
|
— |
0.452
|
0.564
|
-0.393
|
0.985
|
— | — |
-1.191
|
— | — |
No JSON data available for plots.