Hg_chrom3_TN10mRNA_5695
Organism: Heterodera glycines Gene Locus: chr3:7247726-7251143 Feature type: polypeptideProtein Sequence
Length: 640
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.618 | 1.126 | 1.023 | 0.808 | 1.276 | 1.482 | 0.781 | 1.406 | 0.729 | 0.971 | 0.971 | 1.011 | 1.432 | 0.721 | 1.499 | 1.317 | 1.153 | 0.758 | 1.082 | 0.46 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5412
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
RKNCRLLHFVKKKGS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.223
|
0.234
|
0.100
|
0.592
|
0.260
|
0.449
|
0.414
|
0.123
|
0.290
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007803
|
1.000
|
1.000
|
Hsc_gene_5851.t2
|
Hsc_gene_5851.t1;Hsc_gene_5851.t2
|
— |
Q8NI08.2 Nuclear receptor coactivator 7 [Homo sapiens]
|
KAI3415855.1 oxidation resistance protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.955|GO:0009987_0.909|GO:0065007_0.844|GO:0050789_0.828|GO:0050794_0.815|GO:0050896_0.611|GO:0005575_0.599|GO:0110165_0.599|GO:0051716_0.574|GO:0008152_0.571|GO:0043170_0.569|GO:0048519_0.568|GO:0044238_0.566|GO:0048523_0.555|GO:0019222_0.546|GO:0003674_0.544|GO:0080090_0.533|GO:0060255_0.531|GO:0006950_0.527|GO:0042221_0.520
|
IPR006571+464-638_465-638_491-637+
|
SM00584+464-638+
|
PF07534+491-637+TLD
|
— |
PTHR23354+156-636+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-65;256-394
|
2.000
|
66-255;395-640
|
4acj_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.786
|
72570.040
|
7.882
|
12.000
|
29.844
|
10.938
|
56.719
|
43.281
|
16.562
|
13.281
|
49.688
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
yellow
|
1996.808
|
4966.321
|
1268.030
|
1177.279
|
1354.324
|
2012.369
|
1866.738
|
1254.331
|
833.187
|
2898.871
|
2013.578
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.199
|
-2.214
|
— |
0.170
|
0.586
|
— |
-0.788
|
0.716
|
— | — | — | — | — |
No JSON data available for plots.