Hg_chrom3_TN10mRNA_5696
Organism: Heterodera glycines Gene Locus: chr3:7251067-7252996 Feature type: polypeptideProtein Sequence
Length: 535
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.869 | 0.869 | 0.986 | 1.16 | 0.935 | 2.348 | 0.445 | 1.028 | 0.665 | 1.414 | 0.651 | 1.429 | 0.935 | 1.51 | 1.373 | 1.629 | 0.858 | 0.538 | 0.431 | 0.165 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5413
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.623
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRK
|
— | — |
17-41
|
1.000
|
— | — |
0.000
|
— | — |
0.864
|
0.160
|
0.010
|
0.375
|
0.020
|
0.012
|
0.034
|
0.010
|
0.036
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007804
|
1.000
|
1.000
|
Hsc_gene_5852.t1
|
Hsc_gene_5852.t1
|
— |
G5EEJ1.2 Doublesex- and mab-3-related transcription factor dmd-10 [Caenorhabditis elegans]
|
KAI6170685.1 DM DNA-binding domain-containing protein [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0005634|GO:0006355|GO:0043565
|
GO:0008150_0.806|GO:0032501_0.682|GO:0003674_0.677|GO:0005488_0.677|GO:0009987_0.647|GO:0032502_0.636|GO:0048856_0.636|GO:0005575_0.597|GO:0110165_0.593|GO:0007275_0.583|GO:0065007_0.539|GO:0050789_0.531|GO:0003676_0.526|GO:0097159_0.526|GO:0005622_0.512|GO:0003677_0.502
|
IPR001275+42-93_45-86_46-91_148-201_151-190_152-181_152-198+|IPR026607+133-415+|IPR036407+38-86_39-85_145-192_146-191+
|
SM00301+42-93_148-201+
|
PF00751+45-86_151-190+DM_DNA_binding_domain
|
— |
PTHR12322+133-415+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-12;89-139;193-326;438-535
|
3.000
|
13-88;140-192;327-437
|
4yj0_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.824
|
59364.990
|
7.311
|
5.500
|
24.112
|
6.542
|
53.645
|
46.355
|
13.084
|
11.028
|
51.776
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
845.946
|
553.530
|
491.746
|
962.146
|
1981.247
|
1891.970
|
2725.602
|
994.804
|
80.025
|
40.605
|
57.499
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.399
|
0.661
|
1.076
|
1.011
|
— |
0.535
|
-1.031
|
1.594
|
— | — |
6.073
|
— | — |
No JSON data available for plots.