Hg_chrom3_TN10mRNA_5697
Organism: Heterodera glycines Gene Locus: chr3:7259361-7260989 Feature type: polypeptideProtein Sequence
Length: 181
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.707 | 1.67 | 0.201 | 3.429 | 0.368 | 2.267 | 0.723 | 0.276 | 0.614 | 0.373 | 0.084 | 1.3 | 1.074 | 1.912 | 1.015 | 0.868 | 1.902 | 1.256 | 2.55 | 0.487 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5414
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — | — | — |
44-67
|
0.982
|
— | — |
0.024
|
— | — |
0.076
|
0.181
|
0.010
|
0.158
|
0.059
|
0.060
|
0.027
|
0.021
|
0.110
|
0.972
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007805
|
1.000
|
1.000
|
Hsc_gene_5854.t1
|
Hsc_gene_5854.t1
|
— | — |
NP_001122947.2 C6 domain-containing protein [Caenorhabditis elegans];CAM84693.2 C6 domain-containing protein [Caenorhabditis elegans]
|
No
|
-0.290
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.946|GO:0005575_0.709|GO:0110165_0.694|GO:0032501_0.674|GO:0005576_0.612
|
IPR000884+105-158_108-158_110-157+|IPR036383+21-82_86-159_105-154+
|
SM00209+108-158+
|
PF00090+110-157+Thrombospondin_type_1_domain
|
— |
PTHR31936+92-180+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-181
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.944
|
19844.600
|
7.856
|
4.500
|
9.392
|
9.392
|
43.094
|
56.906
|
6.077
|
3.315
|
66.298
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
18.192
|
13.661
|
49.366
|
32.282
|
19.701
|
9.961
|
23.323
|
19.277
|
4.129
|
13.656
|
9.573
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.625
|
1.104
|
-0.504
|
-0.750
|
— |
1.240
|
— | — | — | — | — | — | — |
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