Hg_chrom3_TN10mRNA_5698
Organism: Heterodera glycines Gene Locus: chr3:7260959-7262710 Feature type: polypeptideProtein Sequence
Length: 364
(Signal peptide: 1-34)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.703 | 1.086 | 0.4 | 0.284 | 1.786 | 0.704 | 0.85 | 1.923 | 0.916 | 0.668 | 2.289 | 1.293 | 0.916 | 0.845 | 1.906 | 0.824 | 0.631 | 0.583 | 1.479 | 0.889 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5415
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
20-Not_Clustered
|
0.532
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus|extracellular
|
chloroplast
|
RRPKIKKSSRYQRKRRKIFGVKGEKEKNGRKRRKKVEEKIEETVKKRRKKEKVRREKAEKKQNGDEENNTEKERTAEKKQRRKRWEKKRKGKEERDNWKEETEEEKRVNWKEEEEKGRRERGKKGDSQKEKKKEKRVSWKEK
|
75-95
|
0.982
|
64-92
|
0.950
|
1-34
|
0.865
|
0.999
|
0.000
|
0.000
|
0.509
|
0.155
|
0.110
|
0.220
|
0.141
|
0.012
|
0.058
|
0.015
|
0.161
|
0.871
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007806
|
1.000
|
1.000
|
Hsc_gene_5855.t1
|
Hsc_gene_5855.t1
|
— | — |
KAI3415858.1 hypothetical protein GPALN_005428 [Globodera pallida]
|
MBD9222307
|
0.310
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
122-364
|
1.000
|
1-121
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.698
|
42665.910
|
10.819
|
49.000
|
41.209
|
12.088
|
58.242
|
41.758
|
28.297
|
12.912
|
38.736
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
481.572
|
350.332
|
270.597
|
204.348
|
85.374
|
41.750
|
12.957
|
120.322
|
528.114
|
1303.663
|
971.285
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.603
|
-0.915
|
-0.296
|
-1.291
|
-1.017
|
-1.681
|
1.425
|
-3.076
|
— | — |
-3.850
|
— | — |