Hg_chrom3_TN10mRNA_5699
Organism: Heterodera glycines Gene Locus: chr3:7263350-7265654 Feature type: polypeptideProtein Sequence
Length: 685
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.373 | 1.12 | 0.451 | 0.101 | 2.725 | 0.898 | 0.904 | 0.584 | 1.006 | 0.414 | 1.792 | 0.945 | 0.243 | 0.477 | 3.545 | 0.834 | 1.149 | 0.553 | 1.123 | 0.258 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5416
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.662
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RRGPIILIKRKYRVK,RREISETEIMSRRKTT,KRRQTERKSSVKRREP,RKEFEGNWSRTRGRKS,KRQQTRKDTLARERKE,RKSHSQQESLERRKDT,KRQMRYGPFEKRKHRI,RKSSEEREKSERRKRTE,RRKDTQNGMTVVKRYKT,KRRKKNRGERRKWRRKGI,RRRKSGKRKEERRKTERR,RRRKSVIARRKTGRERKS,KRKYRVKVASKEKTKRVGK,RKYRVKVASKEKTKRVGKR,KRVGKRHKRRKKNRGERRK,KRHKRRKKNRGERRKWRRK,RKGIAAPMPKNGRALIRRK,KRRGKGRERGRRRKSGKRK,RRGKGRERGRRRKSGKRKE,RRKTERREISETEIMSRRK,RKTERREISETEIMSRRKT,RRERNSSEEEEEIETERRK,RRNRIGTLGKREETETRRR,KREETETRRRKSVIARRKT,RRKRTENRKETGRMREKER,RKQTEKTKTMLADKKDKKN,GPFEKRKHRIGKSPPLFRERENPPEGLPKRKLAK
|
72-93
|
0.899
|
9-86
|
0.966
|
— | — |
0.012
|
— | — |
0.201
|
0.064
|
0.065
|
0.293
|
0.202
|
0.041
|
0.127
|
0.035
|
0.226
|
0.859
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007807
|
1.000
|
1.000
|
Hsc_gene_5856.t1
|
Hsc_gene_5856.t1
|
— | — | — |
XP_007698383
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
55-685
|
1.000
|
1-54
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.665
|
81595.400
|
11.177
|
75.000
|
49.197
|
4.380
|
70.365
|
29.635
|
30.365
|
18.832
|
37.372
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
skyblue3
|
1754.522
|
339.954
|
435.997
|
176.584
|
81.763
|
149.960
|
20.261
|
241.408
|
5562.345
|
2962.052
|
4076.463
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.082
|
-1.193
|
-1.141
|
0.888
|
-2.877
|
0.584
|
-3.433
|
— |
-4.808
|
-4.241
|
— | — |
No JSON data available for plots.