Hg_chrom3_TN10mRNA_5700
Organism: Heterodera glycines Gene Locus: chr3:7266030-7266500 Feature type: polypeptideProtein Sequence
Length: 89
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.653 | 0.523 | 1.021 | 0.775 | 1.124 | 1.441 | 0.936 | 1.124 | 0.999 | 1.367 | 0.34 | 1.983 | 1.561 | 1.08 | 1.834 | 0.642 | 1.289 | 1.021 | 1.729 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5417
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.675
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.483
|
0.341
|
0.003
|
0.570
|
0.105
|
0.412
|
0.080
|
0.005
|
0.172
|
0.140
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007808
|
1.000
|
1.000
|
Hsc_gene_5857.t1
|
Hsc_gene_5857.t1
|
— |
Q6NVA8.1 GTP cyclohydrolase 1 feedback regulatory protein [Xenopus tropicalis]
|
KAI6184898.1 GTP cyclohydrolase 1 feedback regulatory protein [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009890
|
GO:0005575_0.915|GO:0008150_0.915|GO:0110165_0.641|GO:0016020_0.528|GO:0065007_0.517|GO:0009987_0.516|GO:0005622_0.510
|
IPR009112+5-85_5-86+|IPR036717+4-86_5-85+
|
— |
PF06399+5-85+GTP_cyclohydrolase_I_feedback_regulatory_protein_(GFRP)
|
G3DSA:3.30.1410.10:FF:000001+4-86+GTP_cyclohydrolase_1_feedback_regulatory_protein
|
PTHR16852+5-86+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
89-89
|
1.000
|
1-88
|
7acc_J
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.545
|
10087.560
|
6.450
|
0.000
|
25.843
|
10.112
|
46.067
|
53.933
|
13.483
|
12.360
|
48.315
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
119.227
|
7.817
|
69.600
|
35.887
|
47.349
|
145.879
|
69.794
|
241.722
|
141.656
|
183.606
|
165.628
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.926
|
2.063
|
-0.847
|
— |
1.637
|
-1.053
|
0.626
|
-1.650
|
— | — | — | — | — |
No JSON data available for plots.