Hg_chrom3_TN10mRNA_5701
Organism: Heterodera glycines Gene Locus: chr3:7276927-7279302 Feature type: polypeptideProtein Sequence
Length: 513
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.861 | 1.269 | 1.063 | 0.538 | 1.105 | 1.25 | 0.789 | 1.267 | 1.256 | 1.317 | 0.827 | 1.835 | 1.733 | 0.862 | 1.472 | 0.696 | 0.639 | 0.65 | 0.9 | 0.86 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5418
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.982
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.406
|
0.156
|
0.053
|
0.523
|
0.075
|
0.165
|
0.074
|
0.055
|
0.187
|
0.088
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007809
|
1.000
|
1.000
|
Hsc_gene_5858.t1
|
— | — |
Q22993.1 Phosphoethanolamine N-methyltransferase 2 [Caenorhabditis elegans]
|
KAH7705149.1 CBN-PMT-2 protein [Aphelenchus avenae]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.833|GO:0009987_0.733|GO:0003674_0.714|GO:0008152_0.704|GO:0009058_0.662|GO:0044238_0.549|GO:0044237_0.540|GO:0005575_0.530|GO:0110165_0.527|GO:0003824_0.504
|
IPR029063+183-328_209-502_339-501+|IPR040516+73-179+
|
— |
PF13489+227-436+Methyltransferase_domain|PF17987+73-179+Phosphoethanolamine_N-methyltransferase_2_N-terminal
|
— |
PTHR44307+142-326+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-12;512-513
|
1.000
|
13-511
|
5wp5_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.683
|
58802.190
|
7.699
|
7.500
|
27.680
|
12.865
|
46.784
|
53.216
|
15.205
|
12.476
|
44.444
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
purple
|
2850.678
|
1238.641
|
2433.704
|
2380.268
|
3114.720
|
5624.725
|
5759.991
|
6129.437
|
835.853
|
1839.270
|
1409.234
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.746
|
0.805
|
— |
0.356
|
0.868
|
— | — | — | — |
1.639
|
— | — | — |
No JSON data available for plots.