Hg_chrom3_TN10mRNA_5702
Organism: Heterodera glycines Gene Locus: chr3:7279444-7282716 Feature type: polypeptideProtein Sequence
Length: 382
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.609 | 1.096 | 0.904 | 1.535 | 1.876 | 0.805 | 1.122 | 0.524 | 0.698 | 0.92 | 1.23 | 1.54 | 1.818 | 1.208 | 1.282 | 0.785 | 0.815 | 0.357 | 0.604 | 0.693 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5419
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.590
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KKEDDKMKGEREEEGKGKK,KKHPNINDEFTPTDGERKR,RKRWKKNGGGEKGVQRGKRREGKKE
|
— | — | — | — | — | — |
0.003
|
— | — |
0.140
|
0.109
|
0.038
|
0.244
|
0.182
|
0.076
|
0.149
|
0.002
|
0.236
|
0.822
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007810
|
1.000
|
1.000
|
Hsc_gene_5859.t1
|
Hsc_gene_5859.t1
|
— | — |
KAI1730139.1 DB module domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR002602+158-260+
|
— |
PF01682+158-260+DB_module
|
— |
PTHR46705+68-293+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
275-382
|
1.000
|
1-274
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.702
|
43138.620
|
5.306
|
-5.000
|
31.675
|
10.733
|
50.000
|
50.000
|
15.445
|
16.230
|
47.906
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
orange
|
332.581
|
286.099
|
773.433
|
238.138
|
173.505
|
281.017
|
242.142
|
319.872
|
450.658
|
249.222
|
335.552
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.203
|
-0.402
|
-1.589
|
-0.487
|
0.709
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.