SCN Proteipedia

Hg_chrom3_TN10mRNA_5706

Organism: Heterodera glycines Gene Locus: chr3:7291795-7301239 Feature type: polypeptide

Protein Sequence

Length: 2,028

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.94	1.044	0.744	0.374	2.392	2.036	0.511	0.888	0.8	1.313	1.218	2.059	0.781	0.313	1.761	0.676	0.736	0.695	0.569	0.421	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5422	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.980

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KRKL,GKVPKGKKKGK,RRAKQETDKQKRKTD,KKVISFFAVVGGTNTKKRT,KRRLTEKIGVKIVQRNVRR,KRCQKLERDFIREEKRRRE,RRHTDTQKTLKSKERRVRE	—	—	—	—	—	—	0.000	—	—	0.188	0.233	0.015	0.744	0.056	0.112	0.243	0.010	0.385	0.034

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007812	1.000	1.000	Hsc_gene_5863.t1	Hsc_gene_5863.t1	—	P12844.1 Myosin-3 [Caenorhabditis elegans]	KAI3415864.1 MYSc [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003774\|GO:0005524\|GO:0016459\|GO:0051015	GO:0005575_0.896\|GO:0110165_0.888\|GO:0005622_0.873\|GO:0043226_0.846\|GO:0043229_0.811\|GO:0008150_0.780\|GO:0005737_0.730\|GO:0043228_0.706\|GO:0043232_0.706\|GO:0099080_0.640\|GO:0099081_0.626\|GO:0099512_0.624\|GO:0032991_0.576\|GO:0005856_0.574\|GO:0009987_0.556\|GO:0003674_0.548\|GO:0032501_0.543	IPR001609+83-799_89-798_92-786_119-138_175-200_234-261_466-494_520-548+\|IPR002928+875-1942+\|IPR004009+35-80_35-85+\|IPR008989+33-84+\|IPR014751+1587-1642_1746-1792+\|IPR027417+62-857+\|IPR036961+87-727+	SM00242+83-799+	PF00063+92-786+Myosin_head_(motor_domain)\|PF01576+875-1942+Myosin_tail\|PF02736+35-80+Myosin_N-terminal_SH3-like_domain	G3DSA:1.10.10.820:FF:000001+290-346+Myosin_heavy_chain\|G3DSA:1.20.120.720:FF:000001+347-455+Myosin_heavy_chain,_muscle\|G3DSA:1.20.5.370:FF:000008+1543-1593+Myosin_heavy_chain\|G3DSA:1.20.58.530:FF:000001+478-684+Myosin_heavy_chain\|G3DSA:2.30.30.360:FF:000001+34-84+Myosin_heavy_chain\|G3DSA:3.40.850.10:FF:000024+87-311+Myosin_heavy_chain,_isoform_J	PTHR45615+35-1931+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	891-1879;1969-2028	2.000	1-890;1880-1968	6qdj_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.686	235973.570	5.825	-18.000	36.884	6.755	58.531	41.469	18.442	18.442	37.475

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	blue	3058.178	3933.647	2488.815	3551.203	1097.539	555.484	2055.871	784.113	1488.116	6838.440	4545.444

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.891	-0.285	0.623	-1.726	-0.968	1.900	0.393	1.534	-2.302	—	-2.440	—	—

No JSON data available for plots.

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