Hg_chrom3_TN10mRNA_5710
Organism: Heterodera glycines Gene Locus: chr3:7326796-7328498 Feature type: polypeptideProtein Sequence
Length: 225
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.879 | 0.93 | 0.727 | 0.92 | 1.037 | 1.14 | 0.476 | 2.0 | 1.481 | 1.742 | 0.808 | 2.614 | 0.37 | 0.684 | 0.998 | 1.143 | 0.947 | 1.145 | 0.342 | 0.654 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5426
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
0.984
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.484
|
0.122
|
0.002
|
0.582
|
0.179
|
0.126
|
0.242
|
0.005
|
0.156
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001211
|
3.000
|
2.000
|
Hsc_gene_19362.t1;Hsc_gene_19362.t3
|
Hsc_gene_19362.t1;Hsc_gene_19362.t2;Hsc_gene_19362.t3
|
— |
Q9NBD7.1 CLIP-associating protein [Drosophila melanogaster]
|
KAI1731776.1 protein CLASP-2 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.935|GO:0009987_0.793|GO:0005575_0.783|GO:0110165_0.773|GO:0005622_0.709|GO:0003674_0.687|GO:0065007_0.677|GO:0050789_0.664|GO:0050794_0.648|GO:0071840_0.634|GO:0016043_0.627|GO:0005488_0.625|GO:0043226_0.599|GO:0016020_0.597|GO:0006996_0.590|GO:0043229_0.587|GO:0005515_0.581|GO:0043933_0.567|GO:0007010_0.566|GO:0007017_0.563|GO:0000226_0.560|GO:0097435_0.558|GO:0031109_0.554|GO:0005737_0.544|GO:0051128_0.503
|
IPR011989+16-213+|IPR016024+22-203+
|
— | — | — |
PTHR21567+25-204+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-225
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.603
|
25079.260
|
7.433
|
4.500
|
24.444
|
8.000
|
46.667
|
53.333
|
14.222
|
10.222
|
47.111
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
243.747
|
83.753
|
124.267
|
69.435
|
81.806
|
59.122
|
139.463
|
81.841
|
140.930
|
720.815
|
472.293
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.341
|
-0.407
|
-0.732
|
— |
-0.453
|
1.251
|
— |
0.916
|
— | — |
-2.922
|
— | — |
No JSON data available for plots.