SCN Proteipedia

Hg_chrom3_TN10mRNA_5712

Organism: Heterodera glycines Gene Locus: chr3:7335301-7338309 Feature type: polypeptide

Protein Sequence

Length: 353

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.614	1.449	0.309	0.391	0.614	1.09	1.147	1.416	0.692	0.498	0.558	3.333	1.102	1.689	0.809	1.416	0.882	0.73	0.872	0.75	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5428	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.787

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRKRR	—	—	13-36	0.984	—	—	0.000	—	—	0.892	0.223	0.014	0.291	0.053	0.042	0.022	0.019	0.033	0.065

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007816	1.000	1.000	Hsc_gene_5866.t1	Hsc_gene_5866.t1	—	O17319.3 Homeobox protein ceh-24 [Caenorhabditis briggsae]	KAI1719064.1 homeobox domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0003677\|GO:0006355	GO:0008150_0.932\|GO:0009987_0.822\|GO:0065007_0.803\|GO:0050789_0.787\|GO:0050794_0.779\|GO:0032501_0.760\|GO:0032502_0.738\|GO:0048856_0.738\|GO:0003674_0.732\|GO:0008152_0.727\|GO:0009058_0.727\|GO:0007275_0.722\|GO:0044237_0.719\|GO:0044238_0.715\|GO:0005575_0.709\|GO:0044249_0.697\|GO:0110165_0.697\|GO:0009059_0.693\|GO:0019222_0.693\|GO:0043170_0.693\|GO:0080090_0.693\|GO:0006139_0.690\|GO:0031323_0.688\|GO:0005488_0.687\|GO:0097159_0.687\|GO:0010467_0.686\|GO:0060255_0.679\|GO:0016070_0.676\|GO:0032774_0.676\|GO:0034654_0.676\|GO:0048731_0.676\|GO:0090304_0.676\|GO:0141187_0.676\|GO:0003676_0.675\|GO:0009889_0.672\|GO:0031326_0.670\|GO:0019219_0.667\|GO:0051252_0.667\|GO:0010556_0.665\|GO:0010468_0.662\|GO:0006351_0.654\|GO:0006355_0.646\|GO:2001141_0.646\|GO:0043226_0.644\|GO:0005622_0.641\|GO:0048513_0.640\|GO:0043229_0.635\|GO:0003677_0.602\|GO:0043565_0.602\|GO:0048518_0.597\|GO:0048522_0.590\|GO:0006357_0.588\|GO:0006366_0.588\|GO:0003690_0.566\|GO:1990837_0.566\|GO:0016020_0.561\|GO:0030154_0.558\|GO:0048869_0.558\|GO:0009893_0.522\|GO:0010604_0.522\|GO:0031325_0.521\|GO:0009891_0.520\|GO:0031328_0.520\|GO:0043227_0.510\|GO:0045935_0.510\|GO:0010557_0.508\|GO:0051254_0.508\|GO:0000976_0.506\|GO:0001067_0.506	IPR000047+178-187_187-203+\|IPR001356+147-207_149-211_150-206_150-208+\|IPR009057+129-209+\|IPR017970+182-205+\|IPR050394+100-212+	SM00389+149-211+	PF00046+150-206+Homeodomain	—	PTHR24340+100-212+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-31;190-281	2.000	32-189;282-353	1ftt_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.979	37156.970	9.656	13.000	15.864	10.482	41.643	58.357	10.482	5.382	61.473

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	293.761	311.547	307.305	197.001	80.140	49.714	171.268	134.549	47.173	780.501	466.218

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.249	-0.798	-0.533	-1.332	-0.673	1.795	1.333	0.490	-4.164	—	-2.975	—	—

No JSON data available for plots.

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